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  5. Sopen07g001140

Sopen07g001140


Description : Ribonuclease III domain


Gene families : OG_42_0000292 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000292_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g001140
Cluster HCCA clusters: Cluster_280

Target Alias Description ECC score Gene Family Method Actions
Bradi2g23187 No alias dicer-like 3 0.02 Orthogroups_2024-Update
Brara.F01924.1 No alias endoribonuclease *(DCL3) 0.04 Orthogroups_2024-Update
Solyc07g005030 No alias Dicer-like 4 0.03 Orthogroups_2024-Update
Solyc07g049150 No alias No description available 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004525 ribonuclease III activity IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006396 RNA processing IEA InterProScan predictions
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003100 PAZ_dom 926 1048
IPR000999 RNase_III_dom 1297 1406
IPR000999 RNase_III_dom 1091 1221
IPR026960 RVT-Znf 10 57
IPR005034 Dicer_dimerisation_dom 639 724
IPR001650 Helicase_C 467 573
IPR011545 DEAD/DEAH_box_helicase_dom 122 282
No external refs found!