Sopen07g001180


Description : Ribosomal L39 protein


Gene families : OG_42_0002686 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002686_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g001180
Cluster HCCA clusters: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
125075 No alias Ribosomal protein L39 family protein 0.03 Orthogroups_2024-Update
228490 No alias Ribosomal protein L39 family protein 0.02 Orthogroups_2024-Update
Brara.K00384.1 No alias component *(eL39) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
GRMZM2G411764 No alias Ribosomal protein L39 family protein 0.04 Orthogroups_2024-Update
LOC_Os02g55370 No alias 60S ribosomal protein L39, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g08320 No alias 60S ribosomal protein L39, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00038050-RA No alias (p51426|rl39_orysa : 108.0) 60S ribosomal protein L39 -... 0.03 Orthogroups_2024-Update
Potri.006G188500 No alias Ribosomal protein L39 family protein 0.03 Orthogroups_2024-Update
Potri.018G022100 No alias Ribosomal protein L39 family protein 0.04 Orthogroups_2024-Update
Potri.018G112301 No alias Ribosomal protein L39 family protein 0.04 Orthogroups_2024-Update
Pp1s104_75V6 No alias 60s ribosomal protein l39 0.04 Orthogroups_2024-Update
Pp1s89_150V6 No alias 60S ribosomal protein L39... 0.04 Orthogroups_2024-Update
Solyc12g010350 No alias 60S ribosomal protein L39 (AHRD V3.3 *** RL39_MAIZE) 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000077 Ribosomal_L39 52 64
IPR000077 Ribosomal_L39 9 37
No external refs found!