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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brachypodium release: Bradi2g61387 | |
| Cluster | HCCA clusters: Cluster_52 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 133644 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Orthogroups_2024-Update | |
| At2g42920 | No alias | Pentatricopeptide repeat-containing protein At2g42920,... | 0.02 | Orthogroups_2024-Update | |
| Bradi1g12697 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Bradi1g36120 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Bradi1g49477 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi2g09423 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi2g09441 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Bradi2g22840 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Bradi2g25480 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.06 | Orthogroups_2024-Update | |
| Bradi3g04890 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Orthogroups_2024-Update | |
| Bradi4g19150 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU2Hr1G107430.1 | No alias | RNA editing factor *(MEF10) | 0.03 | Orthogroups_2024-Update | |
| HORVU3Hr1G079860.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU3Hr1G115530.39 | No alias | Unknown function | 0.06 | Orthogroups_2024-Update | |
| HORVU4Hr1G063960.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU4Hr1G067540.5 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU4Hr1G080660.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU5Hr1G113840.2 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| HORVU7Hr1G092900.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| LOC_Os03g63510 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os04g43430 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| MA_107356g0010 | No alias | (at3g23330 : 545.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| Seita.1G158100.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Seita.3G006500.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Seita.4G216600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.6G159500.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Seita.7G324400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.9G436400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.002G385200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.003G336400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.005G008400.2 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sobic.009G155400.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sopen07g022420 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| evm.model.tig00000808.10 | No alias | no hits & (original description: no original description) | 0.01 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003905 | alkylbase DNA N-glycosylase activity | IEP | Predicted GO |
| BP | GO:0006281 | DNA repair | IEP | Predicted GO |
| BP | GO:0006284 | base-excision repair | IEP | Predicted GO |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Predicted GO |
| MF | GO:0008725 | DNA-3-methyladenine glycosylase activity | IEP | Predicted GO |
| MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | Predicted GO |
| MF | GO:0019104 | DNA N-glycosylase activity | IEP | Predicted GO |
| BP | GO:0033554 | cellular response to stress | IEP | Predicted GO |
| MF | GO:0043733 | DNA-3-methylbase glycosylase activity | IEP | Predicted GO |
| BP | GO:0051716 | cellular response to stimulus | IEP | Predicted GO |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 256 | 277 |
| IPR002885 | Pentatricopeptide_repeat | 79 | 101 |
| IPR002885 | Pentatricopeptide_repeat | 181 | 209 |
| IPR002885 | Pentatricopeptide_repeat | 153 | 173 |
| IPR002885 | Pentatricopeptide_repeat | 281 | 334 |
| IPR002885 | Pentatricopeptide_repeat | 389 | 436 |
| IPR002885 | Pentatricopeptide_repeat | 490 | 537 |
| IPR032867 | DYW_dom | 663 | 786 |
| No external refs found! |