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  5. Bradi2g62740

Bradi2g62740


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi2g62740
Cluster HCCA clusters: Cluster_193

Target Alias Description ECC score Gene Family Method Actions
Brara.E02152.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Glyma.08G213800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.17G165800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
HORVU3Hr1G080120.11 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G047250.4 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os03g08680 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
Seita.1G311600.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.7G298200.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.9G057100.1 No alias RNA editing factor *(OTP85) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004177 aminopeptidase activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 601 725
IPR002885 Pentatricopeptide_repeat 123 150
IPR002885 Pentatricopeptide_repeat 227 256
IPR002885 Pentatricopeptide_repeat 199 222
IPR002885 Pentatricopeptide_repeat 326 374
IPR002885 Pentatricopeptide_repeat 428 475
No external refs found!