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  5. Sopen07g001950

Sopen07g001950


Description : PPR repeat


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g001950
Cluster HCCA clusters: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
111767 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
76175 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
79052 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
96927 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
97289 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
A4A49_38131 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
At1g06140 No alias Pentatricopeptide repeat-containing protein At1g06140,... 0.02 Orthogroups_2024-Update
At1g16480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein... 0.02 Orthogroups_2024-Update
At3g01580 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
At5g16860 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.02 Orthogroups_2024-Update
Bradi2g37360 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g42710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g45110 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g05000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g52870 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g55520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g15307 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g42160 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Brara.A01167.1 No alias RNA editing factor *(DEK36) 0.02 Orthogroups_2024-Update
Brara.E02932.1 No alias RNA editing factor *(MEF10) 0.03 Orthogroups_2024-Update
Brara.E03135.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.F03378.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.G03165.1 No alias RNA editing factor *(OTP87) 0.02 Orthogroups_2024-Update
Brara.H00716.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.H01750.1 No alias RNA editing factor *(SLO4) 0.02 Orthogroups_2024-Update
GRMZM5G849971 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G043900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.04G057300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G008800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.05G026400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G244300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G206900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G159200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.08G086500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G208902 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G252400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G232200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G286300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.10G074100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.11G006200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.12G001100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G005600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G102800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.13G220450 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.15G273200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.19G141800 No alias mitochondrial RNAediting factor 1 0.04 Orthogroups_2024-Update
HORVU2Hr1G028520.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G047290.1 No alias Unknown function 0.01 Orthogroups_2024-Update
MA_27726g0010 No alias (at1g15510 : 744.0) Encodes a pentatricopeptide repeat... 0.02 Orthogroups_2024-Update
PSME_00006196-RA No alias (at1g11290 : 685.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00011507-RA No alias (at2g27610 : 676.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00024152-RA No alias (at2g13600 : 434.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00030552-RA No alias (at4g18750 : 502.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00035796-RA No alias (at1g11290 : 732.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00044871-RA No alias (at2g39620 : 426.0) Pentatricopeptide repeat (PPR)... 0.01 Orthogroups_2024-Update
PSME_00057163-RA No alias (at1g11290 : 707.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00057248-RA No alias (at1g11290 : 733.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Potri.002G155100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.002G214900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.004G047800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.004G124400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.013G152000 No alias mitochondrial editing factor 22 0.03 Orthogroups_2024-Update
Potri.014G097000 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
Seita.1G076000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.1G237400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.1G263300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.2G091900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G177900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.2G203900.1 No alias RNA editing factor *(OTP87) 0.03 Orthogroups_2024-Update
Seita.2G293300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.4G218400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.5G357300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.5G360300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.5G385400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.7G139500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G277600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G068200.1 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
Seita.9G151300.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.9G341000.1 No alias RNA editing factor *(MEF25) 0.03 Orthogroups_2024-Update
Seita.9G355700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G477500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G548100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G069300.2 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
Sobic.001G149100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G151300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G312700.1 No alias RNA editing factor *(MEF25) 0.02 Orthogroups_2024-Update
Sobic.001G347100.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G436600.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G034400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G084400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G111700.6 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G292300.2 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.002G358900.3 No alias RNA editing factor *(OTP90) 0.04 Orthogroups_2024-Update
Sobic.002G389200.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G030100.1 No alias RNA editing factor *(CWM1) 0.03 Orthogroups_2024-Update
Sobic.003G047400.1 No alias RNA editing factor *(OTP81) 0.03 Orthogroups_2024-Update
Sobic.003G142400.2 No alias RNA editing factor *(PGN) 0.03 Orthogroups_2024-Update
Sobic.003G277100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G333200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G051600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G053100.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.004G199400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G217900.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G266300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G290400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G312000.1 No alias RNA editing factor *(CLB19) 0.02 Orthogroups_2024-Update
Sobic.005G210700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G069100.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.006G146400.4 No alias RNA editing factor *(MEF12) 0.03 Orthogroups_2024-Update
Sobic.007G208400.1 No alias RNA editing factor *(REME1) 0.04 Orthogroups_2024-Update
Sobic.008G009000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.008G066900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.008G179000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G136200.1 No alias RNA editing factor *(MEF32) 0.05 Orthogroups_2024-Update
Sobic.009G155400.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G238700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.010G067000.1 No alias RNA editing factor *(MEF29) 0.03 Orthogroups_2024-Update
Solyc01g006920 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.09 Orthogroups_2024-Update
Solyc01g020340 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.08 Orthogroups_2024-Update
Solyc01g081290 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.06 Orthogroups_2024-Update
Solyc01g081560 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.05 Orthogroups_2024-Update
Solyc01g090510 No alias Pentatricopeptide repeat-containing protein, putative... 0.06 Orthogroups_2024-Update
Solyc01g091610 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.06 Orthogroups_2024-Update
Solyc01g094850 No alias Pentatricopeptide repeat superfamily protein, putative... 0.06 Orthogroups_2024-Update
Solyc01g095160 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc01g097670 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc01g100800 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.06 Orthogroups_2024-Update
Solyc01g112200 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Solyc02g065030 No alias No description available 0.05 Orthogroups_2024-Update
Solyc02g088650 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.08 Orthogroups_2024-Update
Solyc03g006990 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc03g007840 No alias Pentatricopeptide repeat-containing protein, putative... 0.08 Orthogroups_2024-Update
Solyc03g051780 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G57790.2) 0.03 Orthogroups_2024-Update
Solyc03g063690 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.06 Orthogroups_2024-Update
Solyc03g093630 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc03g097850 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.09 Orthogroups_2024-Update
Solyc03g116000 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc04g051480 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc04g064750 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.08 Orthogroups_2024-Update
Solyc04g082870 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc05g006800 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc05g023900 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.06 Orthogroups_2024-Update
Solyc06g066080 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc06g084580 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.04 Orthogroups_2024-Update
Solyc07g005850 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc07g042760 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.06 Orthogroups_2024-Update
Solyc07g055310 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.09 Orthogroups_2024-Update
Solyc09g009950 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.09 Orthogroups_2024-Update
Solyc09g059580 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc10g008570 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc10g008590 No alias Pentatricopeptide repeat-containing protein, putative... 0.05 Orthogroups_2024-Update
Solyc10g080220 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc11g005960 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc11g005970 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc11g006700 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.09 Orthogroups_2024-Update
Solyc11g007230 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.05 Orthogroups_2024-Update
Solyc11g011860 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.07 Orthogroups_2024-Update
Solyc11g067210 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Solyc11g071370 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Solyc12g042400 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 384 430
IPR002885 Pentatricopeptide_repeat 483 530
IPR002885 Pentatricopeptide_repeat 82 107
IPR002885 Pentatricopeptide_repeat 183 212
IPR002885 Pentatricopeptide_repeat 284 313
IPR002885 Pentatricopeptide_repeat 559 582
IPR032867 DYW_dom 657 781
No external refs found!