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  5. Bradi3g04730

Bradi3g04730


Description : polyubiquitin 10


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g04730
Cluster HCCA clusters: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
173723 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
228943 No alias polyubiquitin 10 0.05 Orthogroups_2024-Update
Bradi4g38540 No alias ubiquitin extension protein 1 0.03 Orthogroups_2024-Update
Cre09.g396400 No alias related to ubiquitin 1 0.03 Orthogroups_2024-Update
Cre12.g491400 No alias related to ubiquitin 1 0.01 Orthogroups_2024-Update
GRMZM2G118637 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
Glyma.07G199900 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
Glyma.10G051100 No alias ubiquitin 4 0.04 Orthogroups_2024-Update
Glyma.13G117700 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
Glyma.13G138600 No alias ubiquitin 4 0.03 Orthogroups_2024-Update
HORVU3Hr1G014150.2 No alias RUB ubiquitin-fold protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G014180.3 No alias RUB ubiquitin-fold protein 0.03 Orthogroups_2024-Update
Kfl00325_0060 kfl00325_0060_v1.1 (at5g42220 : 100.0) Ubiquitin-like superfamily protein;... 0.02 Orthogroups_2024-Update
LOC_Os09g25320 No alias ubiquitin family protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g39500 No alias ubiquitin fusion protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_10435699g0020 No alias (at2g47110 : 231.0) polyubiquitin gene; ubiquitin 6... 0.02 Orthogroups_2024-Update
MA_14427g0010 No alias (at4g05050 : 393.0) polyubiquitin gene, belongs to a... 0.03 Orthogroups_2024-Update
Mp4g02740.1 No alias ubiquitin-fold protein (UBQ) 0.03 Orthogroups_2024-Update
Mp7g12490.1 No alias component RPL40 of LSU proteome component 0.02 Orthogroups_2024-Update
Potri.006G129600 No alias ubiquitin 4 0.02 Orthogroups_2024-Update
Potri.007G067500 No alias related to ubiquitin 1 0.04 Orthogroups_2024-Update
Pp1s175_73V6 No alias polyubiquitin 0.02 Orthogroups_2024-Update
Pp1s351_6V6 No alias polyubiquitin containing 7 ubiquitin monomers 0.06 Orthogroups_2024-Update
Pp1s46_189V6 No alias polyubiquitin 0.03 Orthogroups_2024-Update
Sobic.002G292500.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Sobic.003G403700.1 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
Sobic.004G049900.1 No alias UBQ ubiquitin-fold protein 0.04 Orthogroups_2024-Update
Sobic.010G040600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc03g082570 No alias ubiquitin-ribosomal fusion protein 0.02 Orthogroups_2024-Update
Solyc06g053210 No alias Ubiquitin (AHRD V3.3 *** J7G5B5_ROSRU) 0.02 Orthogroups_2024-Update
Solyc07g064130 No alias Polyubiquitin (AHRD V3.3 *** UBI1P_NICSY) 0.02 Orthogroups_2024-Update
Solyc08g008590 No alias ubiquitin-ribosomal fusion protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006094 gluconeogenesis IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006542 glutamine biosynthetic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
BP GO:0007021 tubulin complex assembly IEP Predicted GO
BP GO:0007023 post-chaperonin tubulin folding pathway IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0019319 hexose biosynthetic process IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
BP GO:0046364 monosaccharide biosynthetic process IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
MF GO:0048487 beta-tubulin binding IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 3 74
IPR000626 Ubiquitin_dom 231 302
IPR000626 Ubiquitin_dom 79 150
IPR000626 Ubiquitin_dom 155 226
IPR000626 Ubiquitin_dom 307 378
No external refs found!