Sopen07g002060

Description : DNA-dependent RNA polymerase

Gene families : OG_42_0001092 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001092_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen07g002060
Cluster	HCCA clusters: Cluster_43

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g31066	No alias	DNA/RNA polymerases superfamily protein	0.04	Orthogroups_2024-Update
Brara.B00618.1	No alias	nuclear-encoded organellar RNA polymerase *(NEP)	0.05	Orthogroups_2024-Update
Brara.I04503.1	No alias	nuclear-encoded organellar RNA polymerase *(NEP)	0.04	Orthogroups_2024-Update
GRMZM2G115564	No alias	DNA/RNA polymerases superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G381395	No alias	DNA/RNA polymerases superfamily protein	0.03	Orthogroups_2024-Update
Glyma.04G155551	No alias	DNA/RNA polymerases superfamily protein	0.02	Orthogroups_2024-Update
Glyma.08G253800	No alias	DNA/RNA polymerases superfamily protein	0.03	Orthogroups_2024-Update
Glyma.08G263000	No alias	male gametophyte defective 3	0.04	Orthogroups_2024-Update
Glyma.17G071600	No alias	DNA/RNA polymerases superfamily protein	0.04	Orthogroups_2024-Update
HORVU7Hr1G112980.9	No alias	nuclear-encoded organellar RNA polymerase *(NEP)	0.03	Orthogroups_2024-Update
LOC_Os06g44230	No alias	DNA-directed RNA polymerase 3A, chloroplast precursor,...	0.02	Orthogroups_2024-Update
Potri.018G103300	No alias	DNA/RNA polymerases superfamily protein	0.02	Orthogroups_2024-Update
Sobic.010G211500.1	No alias	nuclear-encoded organellar RNA polymerase *(NEP)	0.05	Orthogroups_2024-Update
Solyc07g005930	No alias	DNA-directed RNA polymerase (AHRD V3.3 *** K4CB64_SOLLC)	0.08	Orthogroups_2024-Update
evm.model.tig00021493.48	No alias	no hits & (original description: no original description)	0.01	Orthogroups_2024-Update
evm.model.tig00021493.49	No alias	(q8l6j3\|rpo2b_tobac : 377.0) DNA-directed RNA polymerase...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR029262	RPOL_N	205	523
IPR002092	DNA-dir_Rpol_phage-type	645	1036

External Links

No external refs found!

Sopen07g002060

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation