- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : photosystem I light harvesting complex gene 3
Gene families : OG_42_0005254 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005254_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brachypodium release: Bradi3g07190 | |
| Cluster | HCCA clusters: Cluster_79 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 160411 | No alias | photosystem I light harvesting complex gene 3 | 0.02 | Orthogroups_2024-Update | |
| A4A49_09113 | No alias | chlorophyll a-b binding protein 8, chloroplastic | 0.05 | Orthogroups_2024-Update | |
| A4A49_28400 | No alias | chlorophyll a-b binding protein 8, chloroplastic | 0.07 | Orthogroups_2024-Update | |
| At1g61520 | No alias | Chlorophyll a-b binding protein, chloroplastic... | 0.03 | Orthogroups_2024-Update | |
| Brara.A02541.1 | No alias | component *(LHCa3) of LHC-I complex | 0.06 | Orthogroups_2024-Update | |
| Brara.I01499.1 | No alias | component *(LHCa3) of LHC-I complex | 0.04 | Orthogroups_2024-Update | |
| Brara.K00263.1 | No alias | component *(LHCa3) of LHC-I complex | 0.03 | Orthogroups_2024-Update | |
| Cre11.g467573 | No alias | photosystem I light harvesting complex gene 3 | 0.03 | Orthogroups_2024-Update | |
| Glyma.02G309500 | No alias | photosystem I light harvesting complex gene 3 | 0.05 | Orthogroups_2024-Update | |
| Glyma.14G003400 | No alias | photosystem I light harvesting complex gene 3 | 0.03 | Orthogroups_2024-Update | |
| HORVU6Hr1G033160.11 | No alias | component *(LHCa3) of LHC-I complex | 0.03 | Orthogroups_2024-Update | |
| Kfl00560_0090 | kfl00560_0090_v1.1 | (at1g61520 : 268.0) PSI type III chlorophyll a/b-binding... | 0.06 | Orthogroups_2024-Update | |
| LOC_Os02g10390 | No alias | chlorophyll A-B binding protein, putative, expressed | 0.06 | Orthogroups_2024-Update | |
| MA_815900g0010 | No alias | (at1g61520 : 372.0) PSI type III chlorophyll a/b-binding... | 0.04 | Orthogroups_2024-Update | |
| Mp4g00930.1 | No alias | component LHCa3 of LHC-I complex | 0.05 | Orthogroups_2024-Update | |
| PSME_00027596-RA | No alias | (at1g61520 : 359.0) PSI type III chlorophyll a/b-binding... | 0.04 | Orthogroups_2024-Update | |
| Pp1s197_123V6 | No alias | type iii chlorophyll a b-binding protein | 0.06 | Orthogroups_2024-Update | |
| Pp1s214_86V6 | No alias | type iii chlorophyll a b-binding protein | 0.1 | Orthogroups_2024-Update | |
| Pp1s214_87V6 | No alias | type iii chlorophyll a b-binding protein | 0.03 | Orthogroups_2024-Update | |
| Pp1s429_33V6 | No alias | type iii chlorophyll a b-binding protein | 0.1 | Orthogroups_2024-Update | |
| Seita.4G219400.1 | No alias | component *(LHCa3) of LHC-I complex | 0.05 | Orthogroups_2024-Update | |
| Sobic.010G189300.1 | No alias | component *(LHCa3) of LHC-I complex | 0.09 | Orthogroups_2024-Update | |
| Solyc10g007690 | No alias | Chlorophyll a-b binding protein, chloroplastic (AHRD... | 0.03 | Orthogroups_2024-Update | |
| Solyc12g011280 | No alias | Chlorophyll a-b binding protein, chloroplastic (AHRD... | 0.06 | Orthogroups_2024-Update | |
| Sopen10g003600 | No alias | Chlorophyll A-B binding protein | 0.04 | Orthogroups_2024-Update | |
| Sopen12g006610 | No alias | Chlorophyll A-B binding protein | 0.06 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004096 | catalase activity | IEP | Predicted GO |
| CC | GO:0009521 | photosystem | IEP | Predicted GO |
| CC | GO:0009522 | photosystem I | IEP | Predicted GO |
| CC | GO:0009538 | photosystem I reaction center | IEP | Predicted GO |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Predicted GO |
| BP | GO:0015979 | photosynthesis | IEP | Predicted GO |
| MF | GO:0016851 | magnesium chelatase activity | IEP | Predicted GO |
| CC | GO:0019898 | extrinsic component of membrane | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044425 | membrane part | IEP | Predicted GO |
| CC | GO:0044436 | thylakoid part | IEP | Predicted GO |
| MF | GO:0051002 | ligase activity, forming nitrogen-metal bonds | IEP | Predicted GO |
| MF | GO:0051003 | ligase activity, forming nitrogen-metal bonds, forming coordination complexes | IEP | Predicted GO |
| MF | GO:0071949 | FAD binding | IEP | Predicted GO |
| CC | GO:0098796 | membrane protein complex | IEP | Predicted GO |
| CC | GO:1990204 | oxidoreductase complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022796 | Chloroa_b-bind | 59 | 239 |
| No external refs found! |