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  5. Bradi3g08035

Bradi3g08035


Description : Pectate lyase family protein


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g08035
Cluster HCCA clusters: Cluster_273

Target Alias Description ECC score Gene Family Method Actions
Brara.G02558.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.K01484.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Glyma.01G042700 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
Glyma.19G020200 No alias Pectate lyase family protein 0.02 Orthogroups_2024-Update
MA_10394547g0010 No alias (at4g22090 : 188.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
MA_10430145g0030 No alias (at4g13210 : 482.0) Pectin lyase-like superfamily... 0.05 Orthogroups_2024-Update
PSME_00017512-RA No alias (at4g24780 : 545.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00033127-RA No alias (at5g63180 : 426.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00046555-RA No alias (at4g24780 : 518.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Solyc02g080910 No alias Pectate lyase (AHRD V3.3 *** K4B9W1_SOLLC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
InterPro domains Description Start Stop
IPR007524 Pec_lyase_N 35 66
IPR002022 Pec_lyase 167 348
No external refs found!