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  5. Bradi3g08637

Bradi3g08637


Description : nuclear poly(a) polymerase


Gene families : OG_42_0001415 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001415_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g08637
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
At1g17980 No alias Nuclear poly(A) polymerase 1... 0.03 Orthogroups_2024-Update
GRMZM2G049329 No alias poly(A) polymerase 2 0.02 Orthogroups_2024-Update
Glyma.07G099400 No alias poly(A) polymerase 1 0.03 Orthogroups_2024-Update
LOC_Os02g13400 No alias expressed protein 0.04 Orthogroups_2024-Update
MA_100058g0010 No alias (at4g32850 : 768.0) Encodes a nuclear poly(A)... 0.04 Orthogroups_2024-Update
MA_136671g0010 No alias (at4g32850 : 669.0) Encodes a nuclear poly(A)... 0.03 Orthogroups_2024-Update
PSME_00026682-RA No alias (at4g32850 : 749.0) Encodes a nuclear poly(A)... 0.03 Orthogroups_2024-Update
Seita.2G416900.1 No alias poly(A) RNA polymerase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
MF GO:0004652 polynucleotide adenylyltransferase activity IEA InterProScan predictions
MF GO:0016779 nucleotidyltransferase activity IEA InterProScan predictions
BP GO:0043631 RNA polyadenylation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
InterPro domains Description Start Stop
IPR007010 PolA_pol_RNA-bd_dom 430 498
IPR007010 PolA_pol_RNA-bd_dom 367 425
IPR007012 PolA_pol_cen_dom 21 365
IPR002934 Polymerase_NTP_transf_dom 94 174
No external refs found!