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  5. Bradi3g09597

Bradi3g09597


Description : Pectin lyase-like superfamily protein


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g09597
Cluster HCCA clusters: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
A4A49_11852 No alias putative polygalacturonase 0.03 Orthogroups_2024-Update
A4A49_41445 No alias putative polygalacturonase 0.02 Orthogroups_2024-Update
At1g19170 No alias Pectin lyase-like superfamily protein... 0.05 Orthogroups_2024-Update
At3g48950 No alias Endo-polygalacturonase-like protein... 0.04 Orthogroups_2024-Update
At3g61490 No alias Pectin lyase-like superfamily protein... 0.04 Orthogroups_2024-Update
Bradi3g13260 No alias Pectin lyase-like superfamily protein 0.06 Orthogroups_2024-Update
Brara.A00457.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Brara.F01639.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Glyma.16G179000 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.18G236700 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G117470.3 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
LOC_Os05g50960 No alias polygalacturonase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g14160 No alias polygalacturonase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g26800 No alias polygalacturonase, putative, expressed 0.02 Orthogroups_2024-Update
Potri.003G139100 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.004G073900 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s294_11V6 No alias glycoside hydrolase family 28 expressed 0.04 Orthogroups_2024-Update
Sobic.001G525000.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Sobic.003G223100.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Solyc05g049980 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G61490.4) 0.04 Orthogroups_2024-Update
Solyc06g060170 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT4G33440.1) 0.04 Orthogroups_2024-Update
Solyc12g009210 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G42950.1) 0.03 Orthogroups_2024-Update
Sopen05g028340 No alias Glycosyl hydrolases family 28 0.03 Orthogroups_2024-Update
Sopen06g020290 No alias Glycosyl hydrolases family 28 0.03 Orthogroups_2024-Update
Sopen08g030460 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update
Sopen12g004160 No alias Glycosyl hydrolases family 28 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 146 209
No external refs found!