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  5. Bradi3g12770

Bradi3g12770


Description : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain


Gene families : OG_42_0000547 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g12770
Cluster HCCA clusters: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
Glyma.19G168200 No alias Nuclear transport factor 2 (NTF2) family protein with... 0.03 Orthogroups_2024-Update
Glyma.20G025500 No alias Nuclear transport factor 2 (NTF2) family protein with... 0.02 Orthogroups_2024-Update
Glyma.20G081800 No alias Nuclear transport factor 2 (NTF2) family protein with... 0.05 Orthogroups_2024-Update
HORVU2Hr1G042280.3 No alias mRNA endoribonuclease *(G3BP) 0.02 Orthogroups_2024-Update
Kfl00083_0110 kfl00083_0110_v1.1 (at5g60980 : 110.0) Nuclear transport factor 2 (NTF2)... 0.02 Orthogroups_2024-Update
LOC_Os03g30550 No alias RNA-binding protein-like, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g30430 No alias nuclear transport factor 2, putative, expressed 0.02 Orthogroups_2024-Update
Potri.002G246600 No alias Nuclear transport factor 2 (NTF2) family protein with... 0.03 Orthogroups_2024-Update
Sobic.001G335500.1 No alias mRNA endoribonuclease *(G3BP) 0.03 Orthogroups_2024-Update
Sobic.002G359900.1 No alias mRNA endoribonuclease *(G3BP) 0.02 Orthogroups_2024-Update
Solyc06g007780 No alias Nuclear transport factor 2 family protein with RNA... 0.02 Orthogroups_2024-Update
Solyc06g083730 No alias Nuclear transport factor 2 family protein with RNA... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004827 proline-tRNA ligase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006433 prolyl-tRNA aminoacylation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 318 386
IPR002075 NTF2 12 127
No external refs found!