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Bradi3g13040


Description : RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain


Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g13040
Cluster HCCA clusters: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
At1g74230 No alias Glycine-rich RNA-binding protein 5, mitochondrial... 0.02 Orthogroups_2024-Update
At2g27330 No alias At2g27330 [Source:UniProtKB/TrEMBL;Acc:Q1ECN0] 0.03 Orthogroups_2024-Update
Cre17.g729150 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.01 Orthogroups_2024-Update
HORVU7Hr1G078140.3 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEP Predicted GO
BP GO:0006405 RNA export from nucleus IEP Predicted GO
BP GO:0006406 mRNA export from nucleus IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Predicted GO
BP GO:0009143 nucleoside triphosphate catabolic process IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
BP GO:0050657 nucleic acid transport IEP Predicted GO
BP GO:0050658 RNA transport IEP Predicted GO
BP GO:0051028 mRNA transport IEP Predicted GO
BP GO:0051168 nuclear export IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051236 establishment of RNA localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
BP GO:1901292 nucleoside phosphate catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 126 141
IPR000504 RRM_dom 10 78
No external refs found!