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  5. Bradi3g13260

Bradi3g13260


Description : Pectin lyase-like superfamily protein


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g13260
Cluster HCCA clusters: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
At3g48950 No alias Endo-polygalacturonase-like protein... 0.03 Orthogroups_2024-Update
Bradi3g09597 No alias Pectin lyase-like superfamily protein 0.06 Orthogroups_2024-Update
Brara.A00457.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
GRMZM2G135763 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G007600 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
MA_11025g0010 No alias (at4g33440 : 320.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Potri.004G073900 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Solyc05g049980 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G61490.4) 0.03 Orthogroups_2024-Update
Sopen06g004420 No alias Glycosyl hydrolases family 28 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0007021 tubulin complex assembly IEP Predicted GO
BP GO:0007023 post-chaperonin tubulin folding pathway IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0048487 beta-tubulin binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 175 441
No external refs found!