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Description : 60S acidic ribosomal protein family
Gene families : OG_42_0002306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002306_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brachypodium release: Bradi3g13750 | |
| Cluster | HCCA clusters: Cluster_33 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 133023 | No alias | 60S acidic ribosomal protein family | 0.05 | Orthogroups_2024-Update | |
| At1g01100 | No alias | 60S acidic ribosomal protein P1-1... | 0.03 | Orthogroups_2024-Update | |
| Brara.C02860.1 | No alias | component *(RPP1) of large ribosomal-subunit (LSU) proteome | 0.07 | Orthogroups_2024-Update | |
| Brara.I00080.1 | No alias | component *(RPP1) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
| Brara.I05590.1 | No alias | component *(RPP1) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
| Brara.J00070.1 | No alias | component *(RPP1) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
| Cre17.g738300 | No alias | 60S acidic ribosomal protein family | 0.07 | Orthogroups_2024-Update | |
| Glyma.03G260900 | No alias | 60S acidic ribosomal protein family | 0.07 | Orthogroups_2024-Update | |
| Glyma.04G229000 | No alias | 60S acidic ribosomal protein family | 0.04 | Orthogroups_2024-Update | |
| Glyma.06G135800 | No alias | 60S acidic ribosomal protein family | 0.05 | Orthogroups_2024-Update | |
| Glyma.19G259800 | No alias | 60S acidic ribosomal protein family | 0.07 | Orthogroups_2024-Update | |
| HORVU7Hr1G075360.2 | No alias | component *(RPP1) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
| Mp6g11950.1 | No alias | component RPP1 of LSU proteome component | 0.06 | Orthogroups_2024-Update | |
| PSME_00011424-RA | No alias | (at5g24510 : 97.1) 60S acidic ribosomal protein family;... | 0.04 | Orthogroups_2024-Update | |
| Potri.012G021700 | No alias | 60S acidic ribosomal protein family | 0.03 | Orthogroups_2024-Update | |
| Potri.014G105400 | No alias | 60S acidic ribosomal protein family | 0.04 | Orthogroups_2024-Update | |
| Potri.015G004700 | No alias | 60S acidic ribosomal protein family | 0.04 | Orthogroups_2024-Update | |
| Pp1s134_153V6 | No alias | 60s acidic ribosomal protein | 0.02 | Orthogroups_2024-Update | |
| Pp1s152_152V6 | No alias | 60s acidic ribosomal protein | 0.06 | Orthogroups_2024-Update | |
| Pp1s28_131V6 | No alias | 60s acidic ribosomal protein | 0.05 | Orthogroups_2024-Update | |
| Pp1s49_284V6 | No alias | 60s acidic ribosomal protein | 0.02 | Orthogroups_2024-Update | |
| Pp1s68_115V6 | No alias | 60s acidic ribosomal protein p1 | 0.06 | Orthogroups_2024-Update | |
| Seita.6G085600.1 | No alias | component *(RPP1) of large ribosomal-subunit (LSU) proteome | 0.02 | Orthogroups_2024-Update | |
| Sobic.007G018300.1 | No alias | component *(RPP1) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Solyc01g104370 | No alias | 60S acidic ribosomal protein P1 (AHRD V3.3 *** A0A199VEQ5_ANACO) | 0.07 | Orthogroups_2024-Update | |
| Sopen01g002170 | No alias | 60s Acidic ribosomal protein | 0.05 | Orthogroups_2024-Update | |
| Sopen01g030870 | No alias | 60s Acidic ribosomal protein | 0.02 | Orthogroups_2024-Update | |
| Sopen01g046810 | No alias | 60s Acidic ribosomal protein | 0.08 | Orthogroups_2024-Update | |
| evm.model.contig_2051.2 | No alias | no hits & (original description: no original description) | 0.06 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0004611 | phosphoenolpyruvate carboxykinase activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005622 | intracellular | IEP | Predicted GO |
| CC | GO:0005739 | mitochondrion | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006099 | tricarboxylic acid cycle | IEP | Predicted GO |
| BP | GO:0006101 | citrate metabolic process | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0008150 | biological_process | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| MF | GO:0008324 | cation transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0008519 | ammonium transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0008964 | phosphoenolpyruvate carboxylase activity | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| CC | GO:0009521 | photosystem | IEP | Predicted GO |
| CC | GO:0009523 | photosystem II | IEP | Predicted GO |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| MF | GO:0015077 | monovalent inorganic cation transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0015078 | proton transmembrane transporter activity | IEP | Predicted GO |
| BP | GO:0015672 | monovalent inorganic cation transport | IEP | Predicted GO |
| BP | GO:0015696 | ammonium transport | IEP | Predicted GO |
| BP | GO:0015977 | carbon fixation | IEP | Predicted GO |
| BP | GO:0015979 | photosynthesis | IEP | Predicted GO |
| BP | GO:0015988 | energy coupled proton transmembrane transport, against electrochemical gradient | IEP | Predicted GO |
| BP | GO:0015991 | ATP hydrolysis coupled proton transport | IEP | Predicted GO |
| BP | GO:0016226 | iron-sulfur cluster assembly | IEP | Predicted GO |
| MF | GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
| MF | GO:0016757 | transferase activity, transferring glycosyl groups | IEP | Predicted GO |
| MF | GO:0016758 | transferase activity, transferring hexosyl groups | IEP | Predicted GO |
| BP | GO:0016999 | antibiotic metabolic process | IEP | Predicted GO |
| BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
| CC | GO:0019898 | extrinsic component of membrane | IEP | Predicted GO |
| CC | GO:0030880 | RNA polymerase complex | IEP | Predicted GO |
| BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| CC | GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain | IEP | Predicted GO |
| CC | GO:0034357 | photosynthetic membrane | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| CC | GO:0042651 | thylakoid membrane | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044436 | thylakoid part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| BP | GO:0072350 | tricarboxylic acid metabolic process | IEP | Predicted GO |
| BP | GO:0090662 | ATP hydrolysis coupled transmembrane transport | IEP | Predicted GO |
| BP | GO:0098655 | cation transmembrane transport | IEP | Predicted GO |
| BP | GO:0098660 | inorganic ion transmembrane transport | IEP | Predicted GO |
| BP | GO:0098662 | inorganic cation transmembrane transport | IEP | Predicted GO |
| CC | GO:0098796 | membrane protein complex | IEP | Predicted GO |
| BP | GO:0099131 | ATP hydrolysis coupled ion transmembrane transport | IEP | Predicted GO |
| BP | GO:0099132 | ATP hydrolysis coupled cation transmembrane transport | IEP | Predicted GO |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| CC | GO:1902494 | catalytic complex | IEP | Predicted GO |
| BP | GO:1902600 | proton transmembrane transport | IEP | Predicted GO |
| CC | GO:1990204 | oxidoreductase complex | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |