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  5. Bradi3g13810

Bradi3g13810


Description : ribosomal protein S13A


Gene families : OG_42_0001410 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001410_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g13810
Cluster HCCA clusters: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
440805 No alias ribosomal protein S13A 0.06 Orthogroups_2024-Update
A4A49_64599 No alias 40s ribosomal protein s13 0.14 Orthogroups_2024-Update
At3g60770 No alias 40S ribosomal protein S13-1... 0.03 Orthogroups_2024-Update
Brara.D00142.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Brara.D02734.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Brara.E00496.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.16 Orthogroups_2024-Update
Brara.G01898.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.24 Orthogroups_2024-Update
Brara.I04191.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.19 Orthogroups_2024-Update
Cre07.g331900 No alias ribosomal protein S13A 0.18 Orthogroups_2024-Update
GRMZM2G112050 No alias ribosomal protein S13A 0.18 Orthogroups_2024-Update
GRMZM2G158034 No alias ribosomal protein S13A 0.19 Orthogroups_2024-Update
GRMZM5G852185 No alias ribosomal protein S13A 0.03 Orthogroups_2024-Update
Glyma.05G052300 No alias ribosomal protein S13A 0.22 Orthogroups_2024-Update
Glyma.05G052600 No alias ribosomal protein S13A 0.22 Orthogroups_2024-Update
Glyma.17G134800 No alias ribosomal protein S13A 0.03 Orthogroups_2024-Update
HORVU7Hr1G075250.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.19 Orthogroups_2024-Update
Kfl00229_0020 kfl00229_0020_v1.1 (p62302|rs13_soybn : 266.0) 40S ribosomal protein S13 -... 0.08 Orthogroups_2024-Update
LOC_Os08g02400 No alias 40S ribosomal protein S13, putative, expressed 0.03 Orthogroups_2024-Update
MA_141232g0010 No alias (p62302|rs13_soybn : 291.0) 40S ribosomal protein S13 -... 0.15 Orthogroups_2024-Update
Mp4g03410.1 No alias component RPS13 of SSU proteome 0.17 Orthogroups_2024-Update
PSME_00021950-RA No alias (p62302|rs13_soybn : 223.0) 40S ribosomal protein S13 -... 0.05 Orthogroups_2024-Update
Potri.014G068600 No alias Ribosomal protein S13/S15 0.03 Orthogroups_2024-Update
Pp1s39_130V6 No alias 40s ribosomal protein s13 0.31 Orthogroups_2024-Update
Pp1s97_272V6 No alias 40s ribosomal protein s13 0.08 Orthogroups_2024-Update
Seita.6G084900.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.24 Orthogroups_2024-Update
Seita.6G085100.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.15 Orthogroups_2024-Update
Sobic.002G348100.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Sobic.007G019000.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.2 Orthogroups_2024-Update
Sobic.007G019400.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.21 Orthogroups_2024-Update
Solyc01g091220 No alias 40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN) 0.03 Orthogroups_2024-Update
Solyc03g083530 No alias 40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN) 0.05 Orthogroups_2024-Update
Solyc05g051000 No alias 40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN) 0.07 Orthogroups_2024-Update
Solyc10g018250 No alias 40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN) 0.03 Orthogroups_2024-Update
Solyc11g072260 No alias 40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN) 0.11 Orthogroups_2024-Update
Sopen01g036970 No alias Ribosomal S13/S15 N-terminal domain 0.08 Orthogroups_2024-Update
Sopen03g023340 No alias Ribosomal S13/S15 N-terminal domain 0.09 Orthogroups_2024-Update
Sopen05g029470 No alias Ribosomal S13/S15 N-terminal domain 0.28 Orthogroups_2024-Update
Sopen10g007480 No alias Ribosomal S13/S15 N-terminal domain 0.02 Orthogroups_2024-Update
Sopen11g029930 No alias Ribosomal S13/S15 N-terminal domain 0.07 Orthogroups_2024-Update
evm.model.contig_3443.6 No alias (p62302|rs13_soybn : 220.0) 40S ribosomal protein S13 -... 0.28 Orthogroups_2024-Update
evm.model.tig00000489.15 No alias (p62302|rs13_soybn : 183.0) 40S ribosomal protein S13 -... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004784 superoxide dismutase activity IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000589 Ribosomal_S15 120 192
IPR012606 Ribosomal_S13/S15_N 47 106
No external refs found!