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Bradi3g21360


Description : U1 small nuclear ribonucleoprotein-70K


Gene families : OG_42_0004628 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004628_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g21360
Cluster HCCA clusters: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
PSME_00019787-RA No alias (at3g50670 : 296.0) Encodes U1 snRNP 70K; U1 small... 0.03 Orthogroups_2024-Update
evm.model.tig00001333.27 No alias (at3g50670 : 213.0) Encodes U1 snRNP 70K; U1 small... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 141 210
IPR022023 U1snRNP70_N 42 130
No external refs found!