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  5. Sopen07g004230

Sopen07g004230


Description : ABC transporter


Gene families : OG_42_0002921 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002921_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g004230
Cluster HCCA clusters: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
At4g19210 No alias ABC transporter E family member 2... 0.03 Orthogroups_2024-Update
Kfl00217_0150 kfl00217_0150_v1.1 (at4g19210 : 1019.0) member of RLI subfamily; RNAse l... 0.02 Orthogroups_2024-Update
Mp8g05210.1 No alias ribosome recycling factor (RLI/ABCE) 0.03 Orthogroups_2024-Update
Pp1s233_94V6 No alias rnase l inhibitor-like protein 0.06 Orthogroups_2024-Update
Pp1s402_8V6 No alias rnase l inhibitor-like protein 0.03 Orthogroups_2024-Update
Sobic.001G447300.1 No alias ribosome recycling factor *(RLI/ABCE) 0.03 Orthogroups_2024-Update
Solyc08g075360 No alias ABC transporter family protein (AHRD V3.3 *** A0A097P9S2_HEVBR) 0.02 Orthogroups_2024-Update
evm.model.contig_2169.1 No alias (at4g19210 : 887.0) member of RLI subfamily; RNAse l... 0.03 Orthogroups_2024-Update
evm.model.tig00021517.10 No alias (at4g19210 : 820.0) member of RLI subfamily; RNAse l... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
MF GO:0016887 ATPase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 370 496
IPR003439 ABC_transporter-like 102 244
IPR017896 4Fe4S_Fe-S-bd 49 71
IPR007209 RNaseL-inhib_metal-bd_dom 6 37
No external refs found!