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  5. Bradi3g22680

Bradi3g22680


Description : ATP-dependent RNA helicase, putative


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g22680
Cluster HCCA clusters: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
76120 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
GRMZM2G480809 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Potri.010G057200 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Pp1s124_4V6 No alias atp-dependent rna 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR011709 DUF1605 939 1014
IPR003029 S1_domain 111 164
IPR001650 Helicase_C 600 731
IPR011545 DEAD/DEAH_box_helicase_dom 407 557
IPR007502 Helicase-assoc_dom 793 881
No external refs found!