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  5. Bradi3g23310

Bradi3g23310


Description : Ribosomal protein S7e family protein


Gene families : OG_42_0002228 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002228_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g23310
Cluster HCCA clusters: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
148446 No alias Ribosomal protein S7e family protein 0.11 Orthogroups_2024-Update
A4A49_59553 No alias 40s ribosomal protein s7-1 0.06 Orthogroups_2024-Update
At1g48830 No alias 40S ribosomal protein S7 [Source:UniProtKB/TrEMBL;Acc:A0A178WGF0] 0.06 Orthogroups_2024-Update
Brara.A03880.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Brara.B00641.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.C00708.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Brara.C02996.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.22 Orthogroups_2024-Update
Brara.E03571.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.09 Orthogroups_2024-Update
Brara.J01899.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Cre12.g498900 No alias Ribosomal protein S7e family protein 0.16 Orthogroups_2024-Update
GRMZM2G030016 No alias Ribosomal protein S7e family protein 0.07 Orthogroups_2024-Update
Glyma.05G238000 No alias Ribosomal protein S7e family protein 0.11 Orthogroups_2024-Update
Glyma.07G092900 No alias Ribosomal protein S7e family protein 0.09 Orthogroups_2024-Update
Glyma.08G045100 No alias Ribosomal protein S7e family protein 0.14 Orthogroups_2024-Update
Glyma.09G183300 No alias Ribosomal protein S7e family protein 0.18 Orthogroups_2024-Update
Glyma.13G045800 No alias Ribosomal protein S7e family protein 0.08 Orthogroups_2024-Update
Glyma.19G049200 No alias Ribosomal protein S7e family protein 0.13 Orthogroups_2024-Update
HORVU1Hr1G029870.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
HORVU4Hr1G055230.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Kfl00437_0020 kfl00437_0020_v1.1 (at1g48830 : 254.0) Ribosomal protein S7e family... 0.07 Orthogroups_2024-Update
LOC_Os05g27940 No alias 40S ribosomal protein S7, putative, expressed 0.04 Orthogroups_2024-Update
Mp6g08120.1 No alias component RPS7 of SSU proteome 0.13 Orthogroups_2024-Update
PSME_00000777-RA No alias (q9xet4|rs7_secce : 317.0) 40S ribosomal protein S7 -... 0.03 Orthogroups_2024-Update
Potri.006G087900 No alias Ribosomal protein S7e family protein 0.07 Orthogroups_2024-Update
Pp1s134_167V6 No alias 40s ribosomal protein expressed 0.13 Orthogroups_2024-Update
Pp1s152_7V6 No alias 40s ribosomal protein expressed 0.28 Orthogroups_2024-Update
Pp1s365_30V6 No alias 40S ribosomal protein S7 [Brassica oleracea] 0.08 Orthogroups_2024-Update
Pp1s49_260V6 No alias 40s ribosomal protein 0.15 Orthogroups_2024-Update
Seita.3G280800.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Seita.9G437500.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Sobic.001G403500.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.22 Orthogroups_2024-Update
Sobic.009G101700.2 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.16 Orthogroups_2024-Update
Solyc03g119360 No alias 40S ribosomal protein S7-like protein (AHRD V3.3 ***... 0.15 Orthogroups_2024-Update
Solyc06g069090 No alias 40S ribosomal protein S7-like protein (AHRD V3.3 ***... 0.16 Orthogroups_2024-Update
Sopen03g038230 No alias Ribosomal protein S7e 0.1 Orthogroups_2024-Update
Sopen06g026370 No alias Ribosomal protein S7e 0.2 Orthogroups_2024-Update
evm.model.contig_2068.1 No alias (at1g48830 : 206.0) Ribosomal protein S7e family... 0.23 Orthogroups_2024-Update
evm.model.tig00021682.9 No alias (q9xet4|rs7_secce : 233.0) 40S ribosomal protein S7 -... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000554 Ribosomal_S7e 7 187
No external refs found!