Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brachypodium release: Bradi3g29450 | |
Cluster | HCCA clusters: Cluster_54 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
111891 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi1g00381 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Orthogroups_2024-Update | |
Bradi2g11440 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Bradi2g45250 | No alias | mitochondrial RNAediting factor 1 | 0.03 | Orthogroups_2024-Update | |
Bradi4g38420 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G096602 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G168170 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU0Hr1G023470.1 | No alias | Unknown function | 0.07 | Orthogroups_2024-Update | |
HORVU2Hr1G107430.1 | No alias | RNA editing factor *(MEF10) | 0.03 | Orthogroups_2024-Update | |
HORVU3Hr1G085150.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU4Hr1G009150.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU4Hr1G021240.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU4Hr1G029060.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
HORVU4Hr1G063960.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU5Hr1G040610.4 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU5Hr1G066010.3 | No alias | RNA editing factor *(OTP87) | 0.07 | Orthogroups_2024-Update | |
HORVU5Hr1G079090.7 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
LOC_Os03g60690 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
LOC_Os06g39650 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os11g45410 | No alias | expressed protein | 0.06 | Orthogroups_2024-Update | |
MA_124907g0010 | No alias | (at2g13600 : 490.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
Potri.013G145000 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Seita.1G205700.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Seita.1G215700.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Seita.2G091900.1 | No alias | Unknown function | 0.06 | Orthogroups_2024-Update | |
Seita.2G302700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.2G373100.1 | No alias | RNA editing factor *(OTP90) | 0.03 | Orthogroups_2024-Update | |
Seita.3G006500.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Seita.3G244200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.3G244400.1 | No alias | RNA editing factor *(MEF32) | 0.06 | Orthogroups_2024-Update | |
Seita.4G046900.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Seita.4G168900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.5G124400.1 | No alias | RNA editing factor *(OTP81) | 0.03 | Orthogroups_2024-Update | |
Seita.5G302500.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
Seita.6G130100.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Seita.7G277600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.7G324400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.8G075300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.9G514800.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Sobic.001G282300.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Sobic.002G403500.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.004G025100.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.005G008400.2 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 262 | 309 |
IPR002885 | Pentatricopeptide_repeat | 365 | 410 |
IPR002885 | Pentatricopeptide_repeat | 431 | 461 |
IPR002885 | Pentatricopeptide_repeat | 85 | 115 |
IPR002885 | Pentatricopeptide_repeat | 161 | 191 |
IPR002885 | Pentatricopeptide_repeat | 134 | 158 |
IPR002885 | Pentatricopeptide_repeat | 337 | 360 |
IPR032867 | DYW_dom | 536 | 659 |
No external refs found! |