Bradi3g29450


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g29450
Cluster HCCA clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
111891 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g00381 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Bradi2g11440 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g45250 No alias mitochondrial RNAediting factor 1 0.03 Orthogroups_2024-Update
Bradi4g38420 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G096602 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
GRMZM2G168170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G023470.1 No alias Unknown function 0.07 Orthogroups_2024-Update
HORVU2Hr1G107430.1 No alias RNA editing factor *(MEF10) 0.03 Orthogroups_2024-Update
HORVU3Hr1G085150.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G009150.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G021240.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G029060.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU4Hr1G063960.3 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G040610.4 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G066010.3 No alias RNA editing factor *(OTP87) 0.07 Orthogroups_2024-Update
HORVU5Hr1G079090.7 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os03g60690 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g39650 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g45410 No alias expressed protein 0.06 Orthogroups_2024-Update
MA_124907g0010 No alias (at2g13600 : 490.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Potri.013G145000 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Seita.1G205700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.1G215700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.2G091900.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.2G302700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G373100.1 No alias RNA editing factor *(OTP90) 0.03 Orthogroups_2024-Update
Seita.3G006500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.3G244200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.3G244400.1 No alias RNA editing factor *(MEF32) 0.06 Orthogroups_2024-Update
Seita.4G046900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.4G168900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G124400.1 No alias RNA editing factor *(OTP81) 0.03 Orthogroups_2024-Update
Seita.5G302500.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.6G130100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.7G277600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G324400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G075300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G514800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G282300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G403500.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G025100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G008400.2 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 262 309
IPR002885 Pentatricopeptide_repeat 365 410
IPR002885 Pentatricopeptide_repeat 431 461
IPR002885 Pentatricopeptide_repeat 85 115
IPR002885 Pentatricopeptide_repeat 161 191
IPR002885 Pentatricopeptide_repeat 134 158
IPR002885 Pentatricopeptide_repeat 337 360
IPR032867 DYW_dom 536 659
No external refs found!