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  5. Sopen07g004960

Sopen07g004960


Description : Photosynthetic reaction centre protein


Gene families : OG_42_0003102 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g004960
Cluster HCCA clusters: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
137879 No alias photosystem II reaction center protein D 0.05 Orthogroups_2024-Update
Bradi1g78076 No alias photosystem II reaction center protein D 0.03 Orthogroups_2024-Update
HORVU0Hr1G024740.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU0Hr1G029670.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU2Hr1G121580.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU2Hr1G121790.2 No alias component *(PsbD/D2) of PS-II reaction center complex 0.02 Orthogroups_2024-Update
HORVU4Hr1G066680.2 No alias component *(PsbD/D2) of PS-II reaction center complex 0.02 Orthogroups_2024-Update
HORVU5Hr1G004580.3 No alias component *(PsbD/D2) of PS-II reaction center complex 0.04 Orthogroups_2024-Update
LOC_Os04g16872 No alias photosystem II D2 protein, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00000502-RA No alias (q36814|psbd_wheat : 260.0) Photosystem II D2 protein... 0.05 Orthogroups_2024-Update
PSME_00012989-RA No alias (p06007|psbd_chlre : 161.0) Photosystem II D2 protein... 0.05 Orthogroups_2024-Update
PSME_00012991-RA No alias (p06404|psbd_marpo : 116.0) Photosystem II D2 protein... 0.05 Orthogroups_2024-Update
PSME_00053850-RA No alias (p10803|psbd_secce : 587.0) Photosystem II D2 protein... 0.05 Orthogroups_2024-Update
Potri.001G331000 No alias photosystem II reaction center protein D 0.02 Orthogroups_2024-Update
Solyc09g055950 No alias Photosystem II D2 protein (AHRD V3.3 *-* PSBD_MANES) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0009772 photosynthetic electron transport in photosystem II IEA InterProScan predictions
BP GO:0019684 photosynthesis, light reaction IEA InterProScan predictions
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000484 Photo_RC_L/M 109 222
No external refs found!