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  5. Bradi3g32220

Bradi3g32220


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g32220
Cluster HCCA clusters: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
182822 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
70183 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
A4A49_13653 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
A4A49_25971 No alias pentatricopeptide repeat-containing protein 0.02 Orthogroups_2024-Update
A4A49_26813 No alias putative pentatricopeptide repeat-containing protein,... 0.03 Orthogroups_2024-Update
At1g03510 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
At1g14470 No alias Pentatricopeptide repeat-containing protein At1g14470... 0.04 Orthogroups_2024-Update
At1g25360 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 Orthogroups_2024-Update
At2g20540 No alias Pentatricopeptide repeat-containing protein At2g20540... 0.05 Orthogroups_2024-Update
At2g42920 No alias Pentatricopeptide repeat-containing protein At2g42920,... 0.03 Orthogroups_2024-Update
At3g20730 No alias Pentatricopeptide repeat-containing protein At3g20730... 0.03 Orthogroups_2024-Update
At3g63370 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.05 Orthogroups_2024-Update
At4g20770 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.03 Orthogroups_2024-Update
At5g03800 No alias Glycosyltransferase (Fragment)... 0.02 Orthogroups_2024-Update
Brara.A01167.1 No alias RNA editing factor *(DEK36) 0.02 Orthogroups_2024-Update
Brara.B00951.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.E01751.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.F01067.1 No alias RNA editing factor *(ECB2/VAC1) 0.03 Orthogroups_2024-Update
Brara.F01301.1 No alias RNA editing factor *(OTP970) 0.03 Orthogroups_2024-Update
GRMZM2G022884 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G030148 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G084176 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G158839 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.01G048100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G173200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.02G144100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.02G174500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G129100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G203500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.05G079500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G088000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G160300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.10G190600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.14G194400 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.17G165800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.20G163300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
HORVU0Hr1G015970.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU1Hr1G058280.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU3Hr1G073540.14 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU3Hr1G085770.2 No alias RNA editing factor *(CRR2) 0.03 Orthogroups_2024-Update
HORVU4Hr1G032070.2 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU6Hr1G014780.12 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G090460.2 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os02g06880 No alias EMB2758, putative, expressed 0.03 Orthogroups_2024-Update
MA_470679g0010 No alias (at3g24000 : 433.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_97789g0010 No alias (at3g26540 : 452.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_99849g0010 No alias (at4g02750 : 581.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00002137-RA No alias (at2g22070 : 559.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00005432-RA No alias (at1g11290 : 677.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00011140-RA No alias (at1g11290 : 575.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00020124-RA No alias (at5g09950 : 677.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00026226-RA No alias (at3g46790 : 588.0) Encodes a member of a PCMP (plant... 0.03 Orthogroups_2024-Update
PSME_00036565-RA No alias (at4g18750 : 575.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00046347-RA No alias (at2g13600 : 438.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00051765-RA No alias (at3g03580 : 693.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00057248-RA No alias (at1g11290 : 733.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Potri.018G035900 No alias mitochondrial editing factor 21 0.02 Orthogroups_2024-Update
Seita.3G267700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G068200.1 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
Sobic.001G161100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G380100.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc06g076900 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc11g064750 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Sopen01g032600 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen01g039430 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen04g008620 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen07g004410 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen09g004550 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen09g027460 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005956 protein kinase CK2 complex IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 274 310
IPR002885 Pentatricopeptide_repeat 374 421
IPR032867 DYW_dom 547 613
IPR032867 DYW_dom 616 651
IPR002885 Pentatricopeptide_repeat 248 271
IPR002885 Pentatricopeptide_repeat 348 373
IPR002885 Pentatricopeptide_repeat 76 98
IPR002885 Pentatricopeptide_repeat 145 172
IPR002885 Pentatricopeptide_repeat 175 205
No external refs found!