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  5. Sopen07g005560

Sopen07g005560


Description : Zinc knuckle


Gene families : OG_42_0003236 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003236_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g005560
Cluster HCCA clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Sopen01g006120 No alias Zinc knuckle 0.03 Orthogroups_2024-Update
Sopen02g008070 No alias Zinc knuckle 0.03 Orthogroups_2024-Update
Sopen02g016350 No alias Zinc knuckle 0.03 Orthogroups_2024-Update
Sopen05g009530 No alias Zinc knuckle 0.02 Orthogroups_2024-Update
Sopen05g015550 No alias Zinc knuckle 0.04 Orthogroups_2024-Update
Sopen08g025430 No alias Zinc knuckle 0.04 Orthogroups_2024-Update
Sopen09g029450 No alias Zinc knuckle 0.05 Orthogroups_2024-Update
Sopen11g015810 No alias Zinc knuckle 0.05 Orthogroups_2024-Update
Sopen11g025120 No alias Zinc knuckle 0.05 Orthogroups_2024-Update
Sopen12g019060 No alias Zinc knuckle 0.05 Orthogroups_2024-Update
Sopen12g021680 No alias Zinc knuckle 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 231 245
No external refs found!