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  5. Sopen07g005780

Sopen07g005780


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g005780
Cluster HCCA clusters: Cluster_344

Target Alias Description ECC score Gene Family Method Actions
HORVU0Hr1G011670.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G033880.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU6Hr1G025150.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os02g17292 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g10244 No alias retrotransposon protein, putative, unclassified, expressed 0.04 Orthogroups_2024-Update
LOC_Os10g24400 No alias retrotransposon protein, putative, unclassified, expressed 0.04 Orthogroups_2024-Update
LOC_Os10g28930 No alias retrotransposon protein, putative, Ty3-gypsy subclass, expressed 0.02 Orthogroups_2024-Update
Solyc02g021130 No alias No description available 0.06 Orthogroups_2024-Update
Solyc08g043150 No alias No description available 0.03 Orthogroups_2024-Update
Solyc08g044450 No alias No description available 0.04 Orthogroups_2024-Update
Sopen01g022180 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen04g019550 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Sopen04g030350 No alias Rhamnogalacturonate lyase family 0.04 Orthogroups_2024-Update
Sopen04g035310 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen05g011340 No alias Integrase core domain 0.04 Orthogroups_2024-Update
Sopen08g020970 No alias Reverse transcriptase-like 0.03 Orthogroups_2024-Update
Sopen12g011100 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen12g011940 No alias Integrase core domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 449 465
IPR005162 Retrotrans_gag_dom 276 326
IPR000477 RT_dom 564 723
IPR001584 Integrase_cat-core 1075 1186
No external refs found!