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  5. Bradi3g37120

Bradi3g37120


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g37120
Cluster HCCA clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
182822 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Bradi1g36120 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g58450 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Orthogroups_2024-Update
Brara.C03290.1 No alias RNA editing factor *(MEF12) 0.03 Orthogroups_2024-Update
Brara.D01648.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G077420 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G440349 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Glyma.16G206000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G015970.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G107430.1 No alias RNA editing factor *(MEF10) 0.03 Orthogroups_2024-Update
HORVU3Hr1G110410.2 No alias RNA editing factor *(OTP72) 0.04 Orthogroups_2024-Update
HORVU5Hr1G071640.4 No alias Unknown function 0.05 Orthogroups_2024-Update
LOC_Os02g06880 No alias EMB2758, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g53630 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00010760-RA No alias (at4g18750 : 196.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00023806-RA No alias (at4g33170 : 292.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00024179-RA No alias (at1g11290 : 254.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
Potri.013G006700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.016G065500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Seita.2G293300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G373100.1 No alias RNA editing factor *(OTP90) 0.07 Orthogroups_2024-Update
Seita.4G046900.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.4G090100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G086300.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.001G444200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.005G110550.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.010G197400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sopen03g034780 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen12g032340 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 180 229
IPR002885 Pentatricopeptide_repeat 283 331
IPR002885 Pentatricopeptide_repeat 258 278
IPR002885 Pentatricopeptide_repeat 426 453
IPR032867 DYW_dom 458 581
No external refs found!