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  5. Bradi3g37300

Bradi3g37300


Description : 4-coumarate:CoA ligase 2


Gene families : OG_42_0000133 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000133_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g37300
Cluster HCCA clusters: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
173133 No alias 4-coumarate:CoA ligase 3 0.05 Orthogroups_2024-Update
At1g65060 No alias 4-coumarate--CoA ligase 3... 0.04 Orthogroups_2024-Update
At5g38120 No alias 4-coumarate--CoA ligase-like 8... 0.03 Orthogroups_2024-Update
Bradi3g52350 No alias 4-coumarate:CoA ligase 3 0.04 Orthogroups_2024-Update
Brara.A01009.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G075333 No alias 4-coumarate:CoA ligase 2 0.06 Orthogroups_2024-Update
Glyma.08G329700 No alias acyl-CoA synthetase 5 0.03 Orthogroups_2024-Update
Glyma.11G010500 No alias 4-coumarate:CoA ligase 3 0.03 Orthogroups_2024-Update
Glyma.18G076900 No alias acyl-CoA synthetase 5 0.06 Orthogroups_2024-Update
LOC_Os02g08100 No alias AMP-binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g04000 No alias AMP-binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g34790 No alias AMP-binding domain containing protein, expressed 0.04 Orthogroups_2024-Update
MA_10426159g0010 No alias (at1g20510 : 528.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.02 Orthogroups_2024-Update
MA_10426784g0020 No alias (at4g05160 : 437.0) Encodes a peroxisomal protein... 0.03 Orthogroups_2024-Update
MA_10922g0010 No alias (at1g20510 : 573.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.05 Orthogroups_2024-Update
MA_56692g0010 No alias (o24146|4cl2_tobac : 616.0) 4-coumarate--CoA ligase 2... 0.03 Orthogroups_2024-Update
MA_5g0040 No alias (at4g05160 : 362.0) Encodes a peroxisomal protein... 0.02 Orthogroups_2024-Update
MA_633407g0010 No alias (o24145|4cl1_tobac : 656.0) 4-coumarate--CoA ligase 1... 0.02 Orthogroups_2024-Update
MA_70509g0010 No alias (o24146|4cl2_tobac : 763.0) 4-coumarate--CoA ligase 2... 0.02 Orthogroups_2024-Update
PSME_00008139-RA No alias (p31685|4cl2_soltu : 666.0) 4-coumarate--CoA ligase 2... 0.03 Orthogroups_2024-Update
PSME_00010613-RA No alias (at1g20510 : 572.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.04 Orthogroups_2024-Update
PSME_00010615-RA No alias (at1g20510 : 540.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.03 Orthogroups_2024-Update
PSME_00011573-RA No alias (at4g05160 : 636.0) Encodes a peroxisomal protein... 0.06 Orthogroups_2024-Update
PSME_00013808-RA No alias (at1g20510 : 243.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.03 Orthogroups_2024-Update
PSME_00015568-RA No alias (o24146|4cl2_tobac : 707.0) 4-coumarate--CoA ligase 2... 0.03 Orthogroups_2024-Update
PSME_00015569-RA No alias (o24146|4cl2_tobac : 689.0) 4-coumarate--CoA ligase 2... 0.03 Orthogroups_2024-Update
PSME_00022570-RA No alias (at1g62940 : 648.0) encodes an acyl-CoA synthetase, has... 0.03 Orthogroups_2024-Update
PSME_00022572-RA No alias (at1g20510 : 236.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.03 Orthogroups_2024-Update
PSME_00041965-RA No alias (at1g20510 : 583.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.02 Orthogroups_2024-Update
Potri.001G036900 No alias 4-coumarate:CoA ligase 2 0.04 Orthogroups_2024-Update
Potri.003G099700 No alias AMP-dependent synthetase and ligase family protein 0.03 Orthogroups_2024-Update
Potri.005G248500 No alias OPC-8:0 CoA ligase1 0.04 Orthogroups_2024-Update
Potri.012G095000 No alias AMP-dependent synthetase and ligase family protein 0.04 Orthogroups_2024-Update
Potri.017G033600 No alias AMP-dependent synthetase and ligase family protein 0.04 Orthogroups_2024-Update
Potri.T071600 No alias 4-coumarate:CoA ligase 5 0.03 Orthogroups_2024-Update
Pp1s12_59V6 No alias amp dependent 0.03 Orthogroups_2024-Update
Seita.1G065800.1 No alias p-coumarate 0.08 Orthogroups_2024-Update
Seita.1G283300.1 No alias p-coumarate 0.05 Orthogroups_2024-Update
Seita.6G093400.1 No alias p-coumarate 0.04 Orthogroups_2024-Update
Seita.6G167900.1 No alias p-coumarate 0.07 Orthogroups_2024-Update
Seita.9G184000.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.9G537100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G062500.1 No alias p-coumarate 0.07 Orthogroups_2024-Update
Sobic.007G089900.1 No alias p-coumarate 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig 40 449
IPR025110 AMP-bd_C 458 533
No external refs found!