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  5. Bradi3g38179

Bradi3g38179


Description : FAR1-related sequence 5


Gene families : OG_42_0000075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g38179
Cluster HCCA clusters: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Bradi1g72196 No alias FAR1-related sequence 5 0.03 Orthogroups_2024-Update
Glyma.06G229800 No alias FAR1-related sequence 5 0.02 Orthogroups_2024-Update
LOC_Os03g62660 No alias transposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g30310 No alias transposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Sobic.010G181200.1 No alias FRS/FRF-type transcription factor 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR004330 FAR1_DNA_bnd_dom 46 157
IPR007527 Znf_SWIM 562 598
IPR018289 MULE_transposase_dom 279 372
No external refs found!