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  5. Bradi3g38620

Bradi3g38620


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0007791 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007791_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g38620
Cluster HCCA clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G094586 No alias mitochondrial editing factor 9 0.03 Orthogroups_2024-Update
Glyma.08G133500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os08g37520 No alias pentatricopeptide, putative, expressed 0.05 Orthogroups_2024-Update
Solyc05g006460 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Solyc11g010220 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen05g002390 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 293 339
IPR002885 Pentatricopeptide_repeat 191 238
IPR002885 Pentatricopeptide_repeat 98 126
IPR002885 Pentatricopeptide_repeat 161 186
IPR002885 Pentatricopeptide_repeat 368 391
IPR002885 Pentatricopeptide_repeat 39 67
IPR002885 Pentatricopeptide_repeat 436 462
IPR002885 Pentatricopeptide_repeat 266 287
No external refs found!