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  5. Bradi3g43345

Bradi3g43345


Description : calcium-dependent lipid-binding family protein


Gene families : OG_42_0000864 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000864_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g43345
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
440026 No alias calcium-dependent lipid-binding family protein 0.05 Orthogroups_2024-Update
444980 No alias calcium-dependent lipid-binding family protein 0.04 Orthogroups_2024-Update
82033 No alias pleckstrin homology (PH) domain-containing protein 0.07 Orthogroups_2024-Update
At1g48090 No alias calcium-dependent lipid-binding family protein... 0.03 Orthogroups_2024-Update
Glyma.07G233100 No alias calcium-dependent lipid-binding family protein 0.11 Orthogroups_2024-Update
Glyma.11G039900 No alias pleckstrin homology (PH) domain-containing protein 0.06 Orthogroups_2024-Update
HORVU6Hr1G047560.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU6Hr1G047650.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Kfl00451_0090 kfl00451_0090_v1.1 (at1g48090 : 1719.0) calcium-dependent lipid-binding... 0.1 Orthogroups_2024-Update
MA_10437247g0010 No alias (at4g17140 : 1094.0) pleckstrin homology (PH)... 0.07 Orthogroups_2024-Update
PSME_00004613-RA No alias (at4g17140 : 437.0) pleckstrin homology (PH)... 0.03 Orthogroups_2024-Update
PSME_00009237-RA No alias (at1g48090 : 378.0) calcium-dependent lipid-binding... 0.09 Orthogroups_2024-Update
PSME_00039298-RA No alias (at1g48090 : 467.0) calcium-dependent lipid-binding... 0.06 Orthogroups_2024-Update
Potri.008G100600 No alias calcium-dependent lipid-binding family protein 0.05 Orthogroups_2024-Update
Pp1s17_376V6 No alias vacuolar protein sorting-associated 0.04 Orthogroups_2024-Update
Pp1s314_26V6 No alias vacuolar protein sorting-associated 0.06 Orthogroups_2024-Update
Seita.1G158900.1 No alias Unknown function 0.1 Orthogroups_2024-Update
Sobic.001G293700.2 No alias Unknown function 0.11 Orthogroups_2024-Update
Sopen09g004100 No alias N-terminal region of Chorein, a TM vesicle-mediated sorter 0.04 Orthogroups_2024-Update
evm.model.tig00000042.91 No alias (at4g17140 : 114.0) pleckstrin homology (PH)... 0.03 Orthogroups_2024-Update
evm.model.tig00001343.3 No alias (at4g17140 : 125.0) pleckstrin homology (PH)... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
InterPro domains Description Start Stop
IPR031646 VPS13_N2 140 380
IPR031645 VPS13_C 3815 3962
IPR009291 Vps62 2290 2365
IPR009291 Vps62 1988 2138
IPR031642 VPS13_mid_rpt 575 795
IPR009543 SHR-BD 3253 3564
IPR026854 VPS13_N 2 115
IPR000008 C2_dom 2628 2733
No external refs found!