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  5. Bradi3g49850

Bradi3g49850


Description : expansin B3


Gene families : OG_42_0000145 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000145_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g49850
Cluster HCCA clusters: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
HORVU6Hr1G060410.2 No alias Unknown function 0.01 Orthogroups_2024-Update
HORVU6Hr1G063180.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os03g44290 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00042515-RA No alias (at1g65680 : 150.0) member of BETA-EXPANSINS. Naming... 0.02 Orthogroups_2024-Update
Sobic.001G301000.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004832 valine-tRNA ligase activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006438 valyl-tRNA aminoacylation IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0031647 regulation of protein stability IEP Predicted GO
MF GO:0042301 phosphate ion binding IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
BP GO:0050821 protein stabilization IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 85 157
IPR007117 Expansin_CBD 177 258
No external refs found!