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  5. Bradi3g50980

Bradi3g50980


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g50980

Target Alias Description ECC score Gene Family Method Actions
Bradi1g00381 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Brara.G01254.1 No alias RNA editing factor *(CREF7) 0.02 Orthogroups_2024-Update
Glyma.20G163300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G015970.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU1Hr1G063370.1 No alias RNA editing factor *(MEF32) 0.04 Orthogroups_2024-Update
HORVU3Hr1G058070.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G061600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G067720.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G120410.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os02g06880 No alias EMB2758, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os08g28830 No alias pentatricopeptide, putative, expressed 0.05 Orthogroups_2024-Update
LOC_Os12g36620 No alias pentatricopeptide, putative, expressed 0.04 Orthogroups_2024-Update
MA_82595g0010 No alias (at3g23330 : 602.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00017551-RA No alias (at4g18750 : 421.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
Pp1s73_226V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.3G267700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G403900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G088200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen01g032600 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen03g038830 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen04g008620 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 533 564
IPR002885 Pentatricopeptide_repeat 465 513
IPR002885 Pentatricopeptide_repeat 266 292
IPR002885 Pentatricopeptide_repeat 164 193
IPR002885 Pentatricopeptide_repeat 136 161
IPR002885 Pentatricopeptide_repeat 70 95
IPR002885 Pentatricopeptide_repeat 368 394
IPR002885 Pentatricopeptide_repeat 237 257
No external refs found!