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  5. Sopen07g008090

Sopen07g008090


Description : Integrase core domain


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g008090
Cluster HCCA clusters: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
HORVU5Hr1G106200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g37610 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Solyc01g067050 No alias No description available 0.02 Orthogroups_2024-Update
Solyc02g005160 No alias No description available 0.03 Orthogroups_2024-Update
Solyc03g043680 No alias No description available 0.02 Orthogroups_2024-Update
Solyc06g011300 No alias No description available 0.03 Orthogroups_2024-Update
Solyc07g009390 No alias No description available 0.03 Orthogroups_2024-Update
Sopen01g009450 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen01g012650 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen01g016050 No alias gag-polypeptide of LTR copia-type 0.04 Orthogroups_2024-Update
Sopen02g020410 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen03g010550 No alias Domain of unknown function (DUF4219) 0.03 Orthogroups_2024-Update
Sopen03g025100 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen04g025610 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g019250 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen05g022390 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen06g004750 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen06g008980 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen06g014970 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen06g016250 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g016720 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen09g022050 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen10g024570 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen11g014180 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g005690 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen12g019360 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen12g022840 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
evm.model.contig_3460.4 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.contig_3718.1 No alias (p10978|polx_tobac : 570.0) Retrovirus-related Pol... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013103 RVT_2 628 675
IPR001584 Integrase_cat-core 160 271
IPR001584 Integrase_cat-core 326 422
No external refs found!