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  5. Bradi3g58020

Bradi3g58020


Description : photosystem I light harvesting complex gene 5


Gene families : OG_42_0000070 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000070_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g58020
Cluster HCCA clusters: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
423144 No alias photosystem I light harvesting complex gene 1 0.02 Orthogroups_2024-Update
Cre01.g066917 No alias photosystem II light harvesting complex gene 2.2 0.01 Orthogroups_2024-Update
Cre06.g272650 No alias photosystem I light harvesting complex gene 5 0.02 Orthogroups_2024-Update
Cre06.g278213 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.02 Orthogroups_2024-Update
Cre07.g344950 No alias photosystem I light harvesting complex gene 5 0.02 Orthogroups_2024-Update
Cre10.g425900 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.02 Orthogroups_2024-Update
Cre10.g452050 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.02 Orthogroups_2024-Update
Cre12.g508750 No alias photosystem I light harvesting complex gene 6 0.02 Orthogroups_2024-Update
Cre16.g673650 No alias light harvesting complex of photosystem II 5 0.02 Orthogroups_2024-Update
Cre16.g687900 No alias photosystem I light harvesting complex gene 5 0.01 Orthogroups_2024-Update
GRMZM2G131489 No alias Chlorophyll A-B binding family protein 0.03 Orthogroups_2024-Update
Glyma.07G047600 No alias photosystem I light harvesting complex gene 2 0.02 Orthogroups_2024-Update
Glyma.17G262400 No alias Chlorophyll A-B binding family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G078380.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
HORVU1Hr1G088900.2 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
HORVU1Hr1G088920.3 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
HORVU4Hr1G015260.2 No alias component *(LHCb5) of LHC-II complex 0.02 Orthogroups_2024-Update
HORVU5Hr1G109360.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Kfl00100_0170 kfl00100_0170_v1.1 (at3g54890 : 240.0) Encodes a component of the light... 0.05 Orthogroups_2024-Update
Kfl00120_0160 kfl00120_0160_v1.1 (p12470|cb25_nicpl : 340.0) Chlorophyll a-b binding... 0.02 Orthogroups_2024-Update
Kfl01434_0010 kfl01434_0010_v1.1 (p27493|cb22_tobac : 410.0) Chlorophyll a-b binding... 0.02 Orthogroups_2024-Update
LOC_Os02g52650 No alias chlorophyll A-B binding protein, putative, expressed 0.03 Orthogroups_2024-Update
Mp1g29620.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp7g05890.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp7g05980.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp7g06710.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Orthogroups_2024-Update
Mp7g06730.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp7g06750.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Orthogroups_2024-Update
Mp7g06760.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp7g06770.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Orthogroups_2024-Update
Mp7g06780.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp7g06790.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp7g08940.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp7g09180.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Orthogroups_2024-Update
Mp8g13180.1 No alias component LHCa2 of LHC-I complex 0.02 Orthogroups_2024-Update
PSME_00000370-RA No alias (at1g76570 : 223.0) Chlorophyll A-B binding family... 0.03 Orthogroups_2024-Update
PSME_00044304-RA No alias (p13869|cb12_pethy : 391.0) Chlorophyll a-b binding... 0.02 Orthogroups_2024-Update
PSME_00054524-RA No alias (p10049|cb21_pinth : 468.0) Chlorophyll a-b binding... 0.02 Orthogroups_2024-Update
Potri.005G239200 No alias light-harvesting chlorophyll-protein complex II subunit B1 0.02 Orthogroups_2024-Update
Potri.006G139600 No alias photosystem I light harvesting complex gene 6 0.02 Orthogroups_2024-Update
Pp1s177_13V6 No alias chlorophyll a b binding 0.02 Orthogroups_2024-Update
Pp1s215_109V6 No alias chlorophyll a b binding 0.01 Orthogroups_2024-Update
Pp1s651_2V6 No alias chlorophyll a-b binding protein 0.02 Orthogroups_2024-Update
Seita.1G330600.1 No alias linker protein *(LHCa5) between PS-I complex and NDH complex 0.03 Orthogroups_2024-Update
Seita.2G217800.1 No alias linker protein *(LHCa6) between PS-I complex and NDH complex 0.04 Orthogroups_2024-Update
Sopen07g011840 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004144 diacylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
MF GO:0004779 sulfate adenylyltransferase activity IEP Predicted GO
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Predicted GO
MF GO:0004852 uroporphyrinogen-III synthase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
MF GO:0016411 acylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
BP GO:0045017 glycerolipid biosynthetic process IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 61 229
No external refs found!