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  5. Bradi3g59560

Bradi3g59560


Description : BAH domain ;TFIIS helical bundle-like domain


Gene families : OG_42_0002194 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002194_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g59560
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
440870 No alias BAH domain ;TFIIS helical bundle-like domain 0.02 Orthogroups_2024-Update
At3g48050 No alias Protein SUO [Source:UniProtKB/TrEMBL;Acc:F4JCS8] 0.04 Orthogroups_2024-Update
GRMZM2G162859 No alias BAH domain ;TFIIS helical bundle-like domain 0.04 Orthogroups_2024-Update
Glyma.04G180100 No alias BAH domain ;TFIIS helical bundle-like domain 0.06 Orthogroups_2024-Update
Glyma.05G035100 No alias BAH domain ;TFIIS helical bundle-like domain 0.06 Orthogroups_2024-Update
Glyma.06G184600 No alias BAH domain ;TFIIS helical bundle-like domain 0.03 Orthogroups_2024-Update
Glyma.13G070500 No alias BAH domain ;TFIIS helical bundle-like domain 0.03 Orthogroups_2024-Update
Glyma.17G092200 No alias BAH domain ;TFIIS helical bundle-like domain 0.06 Orthogroups_2024-Update
Glyma.19G012300 No alias BAH domain ;TFIIS helical bundle-like domain 0.04 Orthogroups_2024-Update
MA_10428034g0020 No alias (at3g48050 : 451.0) BAH domain ;TFIIS helical... 0.05 Orthogroups_2024-Update
Mp4g16160.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
PSME_00037659-RA No alias (at3g48050 : 320.0) BAH domain ;TFIIS helical... 0.06 Orthogroups_2024-Update
Potri.012G077500 No alias BAH domain ;TFIIS helical bundle-like domain 0.03 Orthogroups_2024-Update
Potri.012G077700 No alias BAH domain ;TFIIS helical bundle-like domain 0.04 Orthogroups_2024-Update
Potri.015G072800 No alias BAH domain ;TFIIS helical bundle-like domain 0.03 Orthogroups_2024-Update
Pp1s136_127V6 No alias dna binding 0.03 Orthogroups_2024-Update
Pp1s31_186V6 No alias dna binding 0.02 Orthogroups_2024-Update
Seita.9G312400.1 No alias regulatory protein *(SUO) of miRNA biogenesis pathway 0.03 Orthogroups_2024-Update
Sobic.001G289600.1 No alias regulatory protein *(SUO) of miRNA biogenesis pathway 0.04 Orthogroups_2024-Update
Sobic.001G289800.2 No alias regulatory protein *(SUO) of miRNA biogenesis pathway 0.04 Orthogroups_2024-Update
evm.model.tig00001215.1 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
CC GO:0016593 Cdc73/Paf1 complex IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
InterPro domains Description Start Stop
IPR017923 TFIIS_N 380 429
No external refs found!