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  5. Bradi4g00840

Bradi4g00840


Description : Pectin lyase-like superfamily protein


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi4g00840
Cluster HCCA clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
A4A49_28049 No alias putative pectinesterase 8 0.03 Orthogroups_2024-Update
A4A49_38924 No alias putative pectinesterase 53 0.03 Orthogroups_2024-Update
Brara.F03103.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
GRMZM2G120779 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.07G125100 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.09G035100 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G113700 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.19G025500 No alias pectin methylesterase 31 0.03 Orthogroups_2024-Update
HORVU2Hr1G032220.4 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
PSME_00015802-RA No alias (at5g19730 : 209.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00045931-RA No alias (at5g47500 : 448.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Potri.013G008100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s175_19V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Pp1s45_249V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Pp1s461_15V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Solyc01g079180 No alias Pectinesterase (AHRD V3.3 *** K4AXG4_SOLLC) 0.03 Orthogroups_2024-Update
Sopen01g030950 No alias Pectinesterase 0.02 Orthogroups_2024-Update
Sopen10g033270 No alias Pectinesterase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA InterProScan predictions
BP GO:0042545 cell wall modification IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 46 324
No external refs found!