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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_42_0009878 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009878_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brachypodium release: Bradi4g01620 | |
| Cluster | HCCA clusters: Cluster_227 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| HORVU5Hr1G008760.2 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
| Seita.3G392500.1 | No alias | Unknown function | 0.06 | Orthogroups_2024-Update | |
| Sobic.008G171500.3 | No alias | Unknown function | 0.07 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
| MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
| MF | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | IEP | Predicted GO |
| MF | GO:0005525 | GTP binding | IEP | Predicted GO |
| BP | GO:0006260 | DNA replication | IEP | Predicted GO |
| BP | GO:0006553 | lysine metabolic process | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| MF | GO:0008837 | diaminopimelate epimerase activity | IEP | Predicted GO |
| BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | Predicted GO |
| BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | Predicted GO |
| BP | GO:0009085 | lysine biosynthetic process | IEP | Predicted GO |
| BP | GO:0009089 | lysine biosynthetic process via diaminopimelate | IEP | Predicted GO |
| MF | GO:0016725 | oxidoreductase activity, acting on CH or CH2 groups | IEP | Predicted GO |
| MF | GO:0016728 | oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor | IEP | Predicted GO |
| MF | GO:0016854 | racemase and epimerase activity | IEP | Predicted GO |
| MF | GO:0016855 | racemase and epimerase activity, acting on amino acids and derivatives | IEP | Predicted GO |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
| MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
| MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0036361 | racemase activity, acting on amino acids and derivatives | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| BP | GO:0043648 | dicarboxylic acid metabolic process | IEP | Predicted GO |
| BP | GO:0046451 | diaminopimelate metabolic process | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| MF | GO:0047661 | amino-acid racemase activity | IEP | Predicted GO |
| MF | GO:0061731 | ribonucleoside-diphosphate reductase activity | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 443 | 473 |
| IPR002885 | Pentatricopeptide_repeat | 617 | 640 |
| IPR002885 | Pentatricopeptide_repeat | 148 | 205 |
| IPR002885 | Pentatricopeptide_repeat | 335 | 363 |
| IPR002885 | Pentatricopeptide_repeat | 297 | 327 |
| IPR002885 | Pentatricopeptide_repeat | 370 | 419 |
| IPR002885 | Pentatricopeptide_repeat | 545 | 593 |
| IPR002885 | Pentatricopeptide_repeat | 229 | 278 |
| IPR002885 | Pentatricopeptide_repeat | 475 | 523 |
| No external refs found! |