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  5. Bradi4g06010

Bradi4g06010


Description : Histone superfamily protein


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi4g06010
Cluster HCCA clusters: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
Brara.F02852.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
Brara.J00931.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
Cre06.g265350 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g268050 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g273900 No alias histone H2A 10 0.04 Orthogroups_2024-Update
Cre06.g275850 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre12.g504750 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre17.g711700 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre17.g713400 No alias histone H2A 10 0.02 Orthogroups_2024-Update
GRMZM2G109448 No alias histone H2A 12 0.05 Orthogroups_2024-Update
GRMZM2G151726 No alias histone H2A 2 0.07 Orthogroups_2024-Update
GRMZM2G151826 No alias histone H2A 2 0.04 Orthogroups_2024-Update
Glyma.03G241800 No alias gamma histone variant H2AX 0.03 Orthogroups_2024-Update
Glyma.13G333900 No alias histone H2A 12 0.02 Orthogroups_2024-Update
Glyma.13G334300 No alias histone H2A 12 0.03 Orthogroups_2024-Update
Glyma.15G040300 No alias histone H2A 12 0.03 Orthogroups_2024-Update
HORVU5Hr1G026650.2 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU5Hr1G105090.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU5Hr1G108640.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU6Hr1G009020.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
HORVU6Hr1G021160.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
LOC_Os03g17100 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.02 Orthogroups_2024-Update
LOC_Os03g51200 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.02 Orthogroups_2024-Update
LOC_Os05g02300 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.03 Orthogroups_2024-Update
MA_22203g0020 No alias (at5g54640 : 145.0) Isolated from T-DNA insertion line,... 0.03 Orthogroups_2024-Update
MA_7320190g0010 No alias (p19177|h2a_petcr : 149.0) Histone H2A - Petroselinum... 0.04 Orthogroups_2024-Update
PSME_00000143-RA No alias (q84nj4|h2a3_orysa : 176.0) Probable histone H2A.3 -... 0.02 Orthogroups_2024-Update
PSME_00017670-RA No alias (p35063|h2ax_picab : 188.0) Histone H2AX - Picea abies... 0.04 Orthogroups_2024-Update
PSME_00049247-RA No alias (p50567|h2a_chlre : 114.0) Histone H2A - Chlamydomonas... 0.03 Orthogroups_2024-Update
Potri.006G082300 No alias histone H2A 12 0.03 Orthogroups_2024-Update
Pp1s55_112V6 No alias histone 2 0.03 Orthogroups_2024-Update
Sobic.009G015900.1 No alias histone *(H2A) 0.05 Orthogroups_2024-Update
Solyc03g005220 No alias calcium-dependent protein kinase 21 (AHRD V3.3 --* AT4G04720.2) 0.02 Orthogroups_2024-Update
Sopen10g002510 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 26 102
IPR032454 Histone_H2A_C 105 138
No external refs found!