- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : chloroplast RNA binding
Gene families : OG_42_0003865 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003865_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brachypodium release: Bradi4g08030 | |
| Cluster | HCCA clusters: Cluster_202 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Brara.F00592.1 | No alias | endoribonuclease *(CSP41) | 0.02 | Orthogroups_2024-Update | |
| Brara.I05274.1 | No alias | endoribonuclease *(CSP41) | 0.02 | Orthogroups_2024-Update | |
| Glyma.19G227700 | No alias | chloroplast RNA binding | 0.06 | Orthogroups_2024-Update | |
| HORVU2Hr1G029230.1 | No alias | endoribonuclease *(CSP41) | 0.07 | Orthogroups_2024-Update | |
| HORVU2Hr1G036220.1 | No alias | endoribonuclease *(CSP41) | 0.06 | Orthogroups_2024-Update | |
| HORVU2Hr1G053340.3 | No alias | endoribonuclease *(CSP41) | 0.05 | Orthogroups_2024-Update | |
| HORVU4Hr1G052270.4 | No alias | endoribonuclease *(CSP41) | 0.04 | Orthogroups_2024-Update | |
| HORVU5Hr1G009200.2 | No alias | Unknown function | 0.07 | Orthogroups_2024-Update | |
| MA_196108g0010 | No alias | (at1g09340 : 139.0) Encodes CHLOROPLAST RNA BINDING... | 0.03 | Orthogroups_2024-Update | |
| Mp1g11680.1 | No alias | endoribonuclease (CSP41) | 0.04 | Orthogroups_2024-Update | |
| Potri.013G006100 | No alias | chloroplast RNA binding | 0.03 | Orthogroups_2024-Update | |
| Pp1s71_283V6 | No alias | nad-dependent epimerase dehydratase | 0.02 | Orthogroups_2024-Update | |
| Solyc06g073260 | No alias | chloroplast RNA binding protein (AHRD V3.3 *** AT1G09340.1) | 0.02 | Orthogroups_2024-Update | |
| evm.model.contig_3495.2 | No alias | (at1g09340 : 335.0) Encodes CHLOROPLAST RNA BINDING... | 0.02 | Orthogroups_2024-Update | |
| evm.model.tig00021181.14 | No alias | (at1g09340 : 348.0) Encodes CHLOROPLAST RNA BINDING... | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003824 | catalytic activity | IEA | InterProScan predictions |
| MF | GO:0050662 | coenzyme binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0004089 | carbonate dehydratase activity | IEP | Predicted GO |
| MF | GO:0004097 | catechol oxidase activity | IEP | Predicted GO |
| MF | GO:0005509 | calcium ion binding | IEP | Predicted GO |
| MF | GO:0005543 | phospholipid binding | IEP | Predicted GO |
| MF | GO:0005544 | calcium-dependent phospholipid binding | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| MF | GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors | IEP | Predicted GO |
| MF | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor | IEP | Predicted GO |
| MF | GO:0016836 | hydro-lyase activity | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| BP | GO:0055114 | oxidation-reduction process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001509 | Epimerase_deHydtase | 56 | 273 |
| No external refs found! |