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  5. Bradi4g09340

Bradi4g09340


Description : SNF7 family protein


Gene families : OG_42_0001019 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001019_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi4g09340
Cluster HCCA clusters: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Brara.I01850.1 No alias component *(VPS2/CHMP2) of ESCRT-III complex 0.02 Orthogroups_2024-Update
Brara.J00222.1 No alias component *(VPS2/CHMP2) of ESCRT-III complex 0.03 Orthogroups_2024-Update
Glyma.19G166200 No alias vacuolar protein sorting-associated protein 2.3 0.05 Orthogroups_2024-Update
MA_96110g0010 No alias (at2g06530 : 305.0) VPS2.1; CONTAINS InterPro DOMAIN/s:... 0.03 Orthogroups_2024-Update
Seita.8G248400.1 No alias component *(VPS2/CHMP2) of ESCRT-III complex 0.04 Orthogroups_2024-Update
evm.model.tig00020510.41 No alias (at2g06530 : 207.0) VPS2.1; CONTAINS InterPro DOMAIN/s:... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006855 drug transmembrane transport IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
BP GO:0015893 drug transport IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR005024 Snf7_fam 17 186
No external refs found!