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Bradi4g12260


Description : U2 snRNP auxilliary factor, large subunit, splicing factor


Gene families : OG_42_0001657 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001657_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Brachypodium release: Bradi4g12260
Cluster HCCA clusters: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
Brara.H01687.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 Orthogroups_2024-Update
Glyma.04G255700 No alias U2 snRNP auxilliary factor, large subunit, splicing factor 0.03 Orthogroups_2024-Update
Kfl00054_0160 kfl00054_0160_v1.1 (at1g60900 : 445.0) U2 snRNP auxilliary factor, large... 0.03 Orthogroups_2024-Update
PSME_00029219-RA No alias (at1g60900 : 136.0) U2 snRNP auxilliary factor, large... 0.03 Orthogroups_2024-Update
Pp1s88_42V6 No alias u2 snrnp auxiliary large subunit 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 363 432
No external refs found!