Bradi4g19990

Description : RNA helicase family protein

Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium release: Bradi4g19990
Cluster	HCCA clusters: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
At3g26560	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	Orthogroups_2024-Update
Brara.K01162.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Cre24.g755347	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
GRMZM2G029258	No alias	ATP-dependent RNA helicase, putative	0.03	Orthogroups_2024-Update
GRMZM2G480809	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Glyma.05G146100	No alias	RNA helicase family protein	0.03	Orthogroups_2024-Update
Glyma.14G217400	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Glyma.15G031900	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Glyma.17G256200	No alias	ATP-dependent RNA helicase, putative	0.02	Orthogroups_2024-Update
Glyma.19G218200	No alias	RNA helicase family protein	0.03	Orthogroups_2024-Update
Kfl00020_0480	kfl00020_0480_v1.1	(at3g26560 : 1414.0) ATP-dependent RNA helicase,...	0.02	Orthogroups_2024-Update
Kfl00433_0080	kfl00433_0080_v1.1	(at1g33390 : 423.0) Over-expression of this gene results...	0.02	Orthogroups_2024-Update
Kfl00502_0080	kfl00502_0080_v1.1	(at4g18465 : 521.0) RNA helicase family protein;...	0.02	Orthogroups_2024-Update
Mp2g13680.1	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	Orthogroups_2024-Update
Seita.1G136100.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Seita.3G152600.1	No alias	RNA helicase *(Prp2)	0.04	Orthogroups_2024-Update
Seita.9G426000.1	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex	0.04	Orthogroups_2024-Update
Sobic.001G473000.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.002G313400.1	No alias	RNA helicase *(Prp16)	0.06	Orthogroups_2024-Update
Sobic.004G174200.1	No alias	RNA helicase *(Prp2)	0.04	Orthogroups_2024-Update
Solyc07g039550	No alias	RNA helicase DEAH-box21	0.03	Orthogroups_2024-Update
Solyc12g089010	No alias	ATP-dependent RNA helicase, putative (AHRD V3.3 *** B9SMB4_RICCO)	0.04	Orthogroups_2024-Update
Sopen01g053030	No alias	Oligonucleotide/oligosaccharide-binding (OB)-fold	0.03	Orthogroups_2024-Update
evm.model.contig_524.2	No alias	(at3g62310 : 724.0) RNA helicase family protein;...	0.01	Orthogroups_2024-Update
evm.model.tig00000842.2	No alias	(at3g26560 : 568.0) ATP-dependent RNA helicase,...	0.03	Orthogroups_2024-Update
evm.model.tig00021589.29	No alias	(at3g26560 : 868.0) ATP-dependent RNA helicase,...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Predicted GO
BP	GO:0002097	tRNA wobble base modification	IEP	Predicted GO
BP	GO:0002098	tRNA wobble uridine modification	IEP	Predicted GO
MF	GO:0003682	chromatin binding	IEP	Predicted GO
MF	GO:0003684	damaged DNA binding	IEP	Predicted GO
MF	GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
MF	GO:0004843	thiol-dependent ubiquitin-specific protease activity	IEP	Predicted GO
CC	GO:0005643	nuclear pore	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006284	base-excision repair	IEP	Predicted GO
BP	GO:0006289	nucleotide-excision repair	IEP	Predicted GO
BP	GO:0006325	chromatin organization	IEP	Predicted GO
BP	GO:0006338	chromatin remodeling	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006400	tRNA modification	IEP	Predicted GO
BP	GO:0006405	RNA export from nucleus	IEP	Predicted GO
BP	GO:0006406	mRNA export from nucleus	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0006476	protein deacetylation	IEP	Predicted GO
BP	GO:0006508	proteolysis	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006807	nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0006913	nucleocytoplasmic transport	IEP	Predicted GO
BP	GO:0007010	cytoskeleton organization	IEP	Predicted GO
MF	GO:0008092	cytoskeletal protein binding	IEP	Predicted GO
MF	GO:0008134	transcription factor binding	IEP	Predicted GO
MF	GO:0008233	peptidase activity	IEP	Predicted GO
MF	GO:0008234	cysteine-type peptidase activity	IEP	Predicted GO
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Predicted GO
BP	GO:0009987	cellular process	IEP	Predicted GO
BP	GO:0010564	regulation of cell cycle process	IEP	Predicted GO
MF	GO:0015631	tubulin binding	IEP	Predicted GO
BP	GO:0015931	nucleobase-containing compound transport	IEP	Predicted GO
BP	GO:0016043	cellular component organization	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016458	gene silencing	IEP	Predicted GO
BP	GO:0016575	histone deacetylation	IEP	Predicted GO
BP	GO:0016579	protein deubiquitination	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Predicted GO
BP	GO:0016973	poly(A)+ mRNA export from nucleus	IEP	Predicted GO
MF	GO:0017025	TBP-class protein binding	IEP	Predicted GO
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	Predicted GO
BP	GO:0031047	gene silencing by RNA	IEP	Predicted GO
MF	GO:0031491	nucleosome binding	IEP	Predicted GO
BP	GO:0032465	regulation of cytokinesis	IEP	Predicted GO
BP	GO:0032954	regulation of cytokinetic process	IEP	Predicted GO
BP	GO:0032955	regulation of division septum assembly	IEP	Predicted GO
CC	GO:0033588	Elongator holoenzyme complex	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0035601	protein deacylation	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEP	Predicted GO
MF	GO:0043015	gamma-tubulin binding	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
BP	GO:0043044	ATP-dependent chromatin remodeling	IEP	Predicted GO
BP	GO:0043170	macromolecule metabolic process	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
BP	GO:0044087	regulation of cellular component biogenesis	IEP	Predicted GO
MF	GO:0044877	protein-containing complex binding	IEP	Predicted GO
BP	GO:0050657	nucleic acid transport	IEP	Predicted GO
BP	GO:0050658	RNA transport	IEP	Predicted GO
BP	GO:0051028	mRNA transport	IEP	Predicted GO
BP	GO:0051128	regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051168	nuclear export	IEP	Predicted GO
BP	GO:0051169	nuclear transport	IEP	Predicted GO
BP	GO:0051236	establishment of RNA localization	IEP	Predicted GO
BP	GO:0051301	cell division	IEP	Predicted GO
BP	GO:0051302	regulation of cell division	IEP	Predicted GO
BP	GO:0051726	regulation of cell cycle	IEP	Predicted GO
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Predicted GO
BP	GO:0070646	protein modification by small protein removal	IEP	Predicted GO
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
BP	GO:0098732	macromolecule deacylation	IEP	Predicted GO
MF	GO:0101005	ubiquitinyl hydrolase activity	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Predicted GO
BP	GO:1901891	regulation of cell septum assembly	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR011709	DUF1605	565	646
IPR011545	DEAD/DEAH_box_helicase_dom	24	175
IPR001650	Helicase_C	217	344
IPR007502	Helicase-assoc_dom	409	487

External Links

No external refs found!

Bradi4g19990

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation