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Bradi4g20404


Description : pre-mRNA-processing protein 40A


Gene families : OG_42_0002795 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002795_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi4g20404
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
A4A49_22018 No alias pre-mrna-processing protein 40a 0.03 Orthogroups_2024-Update
Cre07.g351000 No alias pre-mRNA-processing protein 40A 0.04 Orthogroups_2024-Update
Glyma.10G255700 No alias pre-mRNA-processing protein 40B 0.04 Orthogroups_2024-Update
Glyma.14G089078 No alias pre-mRNA-processing protein 40A 0.03 Orthogroups_2024-Update
Glyma.17G233000 No alias pre-mRNA-processing protein 40A 0.03 Orthogroups_2024-Update
Glyma.20G135800 No alias pre-mRNA-processing protein 40B 0.07 Orthogroups_2024-Update
Mp2g00410.1 No alias pre-mRNA-processing protein (PRP40A/B) 0.06 Orthogroups_2024-Update
Potri.009G085400 No alias pre-mRNA-processing protein 40A 0.02 Orthogroups_2024-Update
Pp1s100_243V6 No alias protein binding 0.02 Orthogroups_2024-Update
Pp1s174_92V6 No alias protein binding 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001202 WW_dom 190 216
IPR001202 WW_dom 231 257
IPR002713 FF_domain 761 807
IPR002713 FF_domain 625 680
IPR002713 FF_domain 555 600
IPR002713 FF_domain 483 531
IPR002713 FF_domain 416 465
No external refs found!