Bradi4g20470

Description : CLPC homologue 1

Gene families : OG_42_0000227 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000227_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium release: Bradi4g20470
Cluster	HCCA clusters: Cluster_150

Target	Alias	Description	ECC score	Gene Family Method
Glyma.04G203300	No alias	Clp ATPase	0.05	Orthogroups_2024-Update
Kfl00387_0020	kfl00387_0020_v1.1	(at5g15450 : 1248.0) Encodes a chloroplast-targeted...	0.02	Orthogroups_2024-Update
Pp1s196_10V6	No alias	chaperone clpb expressed	0.02	Orthogroups_2024-Update
Seita.6G076400.1	No alias	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	Orthogroups_2024-Update
Sobic.008G081900.1	No alias	chaperone component *(ClpC) of chloroplast Clp-type...	0.02	Orthogroups_2024-Update
evm.model.tig00020563.86	No alias	(at5g50920 : 990.0) Encodes a protein that is similar to...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Predicted GO
MF	GO:0003677	DNA binding	IEP	Predicted GO
BP	GO:0006270	DNA replication initiation	IEP	Predicted GO
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	Predicted GO
BP	GO:0022406	membrane docking	IEP	Predicted GO
CC	GO:0044448	cell cortex part	IEP	Predicted GO
BP	GO:0048278	vesicle docking	IEP	Predicted GO
BP	GO:0051640	organelle localization	IEP	Predicted GO
CC	GO:0099023	tethering complex	IEP	Predicted GO
BP	GO:0140029	exocytic process	IEP	Predicted GO
BP	GO:0140056	organelle localization by membrane tethering	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR019489	Clp_ATPase_C	833	912
IPR003959	ATPase_AAA_core	308	424
IPR004176	Clp_N	115	167
IPR004176	Clp_N	191	241
IPR003959	ATPase_AAA_core	646	826

External Links

No external refs found!