Bradi4g20562

Description : Function unknown

Gene families : OG_42_0000180 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000180_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium release: Bradi4g20562
Cluster	HCCA clusters: Cluster_272

Target	Alias	Description	ECC score	Gene Family Method
Bradi3g34611	No alias	Ribonuclease H-like superfamily protein	0.03	Orthogroups_2024-Update
Bradi3g45424	No alias	Function unknown	0.01	Orthogroups_2024-Update
LOC_Os02g18530	No alias	expressed protein	0.02	Orthogroups_2024-Update
LOC_Os04g29469	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
LOC_Os06g09530	No alias	expressed protein	0.02	Orthogroups_2024-Update
LOC_Os06g16600	No alias	RNA-directed DNA polymerase, putative, expressed	0.03	Orthogroups_2024-Update
Sobic.001G521800.1	No alias	Unknown function	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEA	InterProScan predictions
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004649	poly(ADP-ribose) glycohydrolase activity	IEP	Predicted GO
MF	GO:0004834	tryptophan synthase activity	IEP	Predicted GO
MF	GO:0005507	copper ion binding	IEP	Predicted GO
BP	GO:0006568	tryptophan metabolic process	IEP	Predicted GO
BP	GO:0006586	indolalkylamine metabolic process	IEP	Predicted GO
CC	GO:0030677	ribonuclease P complex	IEP	Predicted GO
MF	GO:0042393	histone binding	IEP	Predicted GO
BP	GO:0042430	indole-containing compound metabolic process	IEP	Predicted GO
CC	GO:1902555	endoribonuclease complex	IEP	Predicted GO
CC	GO:1905348	endonuclease complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002156	RNaseH_domain	69	153

External Links

No external refs found!