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  5. Bradi4g21170

Bradi4g21170


Description : light harvesting complex of photosystem II 5


Gene families : OG_42_0000070 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000070_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi4g21170
Cluster HCCA clusters: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
446130 No alias photosystem I light harvesting complex gene 2 0.02 Orthogroups_2024-Update
A4A49_03871 No alias chlorophyll a-b binding protein 36, chloroplastic 0.02 Orthogroups_2024-Update
A4A49_12650 No alias chlorophyll a-b binding protein 6a, chloroplastic 0.03 Orthogroups_2024-Update
A4A49_14365 No alias chlorophyll a-b binding protein 21, chloroplastic 0.03 Orthogroups_2024-Update
A4A49_24464 No alias chlorophyll a-b binding protein 36, chloroplastic 0.03 Orthogroups_2024-Update
A4A49_33198 No alias chlorophyll a-b binding protein p4, chloroplastic 0.03 Orthogroups_2024-Update
AC207722.2_FG009 No alias photosystem II light harvesting complex gene B1B2 0.02 Orthogroups_2024-Update
At1g29910 No alias Chlorophyll a-b binding protein 3, chloroplastic... 0.05 Orthogroups_2024-Update
At2g05070 No alias Chlorophyll a-b binding protein 2.2, chloroplastic... 0.04 Orthogroups_2024-Update
At2g34430 No alias Chlorophyll a-b binding protein, chloroplastic... 0.05 Orthogroups_2024-Update
At3g27690 No alias Chlorophyll a-b binding protein, chloroplastic... 0.05 Orthogroups_2024-Update
At3g47470 No alias Chlorophyll a-b binding protein, chloroplastic... 0.04 Orthogroups_2024-Update
At3g54890 No alias Chlorophyll a-b binding protein, chloroplastic... 0.04 Orthogroups_2024-Update
At3g61470 No alias Photosystem I chlorophyll a/b-binding protein 2,... 0.03 Orthogroups_2024-Update
At5g54270 No alias Chlorophyll a-b binding protein 3, chloroplastic... 0.05 Orthogroups_2024-Update
Brara.B01393.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.B03307.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.04 Orthogroups_2024-Update
Brara.C01741.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.05 Orthogroups_2024-Update
Brara.C02638.1 No alias component *(LHCb5) of LHC-II complex 0.04 Orthogroups_2024-Update
Brara.C04035.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.05 Orthogroups_2024-Update
Brara.D00100.1 No alias component *(LHCa2) of LHC-I complex 0.03 Orthogroups_2024-Update
Brara.D02090.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Brara.E00980.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.E00981.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.04 Orthogroups_2024-Update
Brara.E00982.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.04 Orthogroups_2024-Update
Brara.F01756.1 No alias component *(LHCa4) of LHC-I complex 0.04 Orthogroups_2024-Update
Brara.F03187.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.06 Orthogroups_2024-Update
Brara.G01647.1 No alias component *(LHCa1) of LHC-I complex 0.06 Orthogroups_2024-Update
Brara.G01921.1 No alias component *(LHCa2) of LHC-I complex 0.04 Orthogroups_2024-Update
Brara.H02384.1 No alias linker protein *(LHCa6) between PS-I complex and NDH complex 0.03 Orthogroups_2024-Update
Brara.I00297.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.04 Orthogroups_2024-Update
Brara.I02349.1 No alias component *(LHCb5) of LHC-II complex 0.04 Orthogroups_2024-Update
Brara.I02856.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.05 Orthogroups_2024-Update
Brara.I02857.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.02 Orthogroups_2024-Update
Brara.I03747.1 No alias component *(LHCa1) of LHC-I complex 0.04 Orthogroups_2024-Update
Brara.J00907.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
GRMZM2G057281 No alias light-harvesting chlorophyll B-binding protein 3 0.03 Orthogroups_2024-Update
GRMZM2G072280 No alias photosystem I light harvesting complex gene 2 0.04 Orthogroups_2024-Update
GRMZM2G103101 No alias photosystem I light harvesting complex gene 5 0.03 Orthogroups_2024-Update
GRMZM2G153184 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.04 Orthogroups_2024-Update
GRMZM2G160268 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.04 Orthogroups_2024-Update
Glyma.02G064700 No alias photosystem I light harvesting complex gene 1 0.03 Orthogroups_2024-Update
Glyma.02G305400 No alias photosystem II light harvesting complex gene 2.1 0.03 Orthogroups_2024-Update
Glyma.03G262300 No alias photosystem I light harvesting complex gene 2 0.02 Orthogroups_2024-Update
Glyma.04G167900 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.03 Orthogroups_2024-Update
Glyma.05G128000 No alias chlorophyll A/B binding protein 1 0.02 Orthogroups_2024-Update
Glyma.06G194900 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.03 Orthogroups_2024-Update
Glyma.07G047600 No alias photosystem I light harvesting complex gene 2 0.03 Orthogroups_2024-Update
Glyma.08G082900 No alias chlorophyll A/B binding protein 1 0.02 Orthogroups_2024-Update
Glyma.09G154700 No alias light harvesting complex of photosystem II 5 0.02 Orthogroups_2024-Update
Glyma.10G177200 No alias light harvesting complex of photosystem II 5 0.03 Orthogroups_2024-Update
Glyma.13G282000 No alias light-harvesting chlorophyll B-binding protein 3 0.03 Orthogroups_2024-Update
Glyma.14G008000 No alias photosystem II light harvesting complex gene 2.1 0.03 Orthogroups_2024-Update
Glyma.16G016100 No alias photosystem I light harvesting complex gene 2 0.03 Orthogroups_2024-Update
Glyma.16G145800 No alias photosystem I light harvesting complex gene 1 0.03 Orthogroups_2024-Update
Glyma.16G205200 No alias light harvesting complex of photosystem II 5 0.03 Orthogroups_2024-Update
Glyma.20G212900 No alias light harvesting complex of photosystem II 5 0.03 Orthogroups_2024-Update
HORVU1Hr1G078380.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.05 Orthogroups_2024-Update
HORVU1Hr1G088870.2 No alias component *(LHCb1/2/3) of LHC-II complex 0.04 Orthogroups_2024-Update
HORVU1Hr1G088880.2 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
HORVU1Hr1G088900.2 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
HORVU1Hr1G088920.3 No alias component *(LHCb1/2/3) of LHC-II complex 0.04 Orthogroups_2024-Update
HORVU1Hr1G089180.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.04 Orthogroups_2024-Update
HORVU2Hr1G036960.9 No alias component *(LHCa2) of LHC-I complex 0.07 Orthogroups_2024-Update
HORVU2Hr1G040780.4 No alias component *(LHCb1/2/3) of LHC-II complex 0.07 Orthogroups_2024-Update
HORVU4Hr1G015260.2 No alias component *(LHCb5) of LHC-II complex 0.05 Orthogroups_2024-Update
HORVU5Hr1G066280.1 No alias component *(LHCa4) of LHC-I complex 0.06 Orthogroups_2024-Update
HORVU5Hr1G082420.2 No alias component *(LHCb1/2/3) of LHC-II complex 0.06 Orthogroups_2024-Update
HORVU5Hr1G087250.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.06 Orthogroups_2024-Update
HORVU5Hr1G109250.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.07 Orthogroups_2024-Update
HORVU5Hr1G109260.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.08 Orthogroups_2024-Update
HORVU5Hr1G109360.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.06 Orthogroups_2024-Update
HORVU5Hr1G124160.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.06 Orthogroups_2024-Update
HORVU6Hr1G016850.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.04 Orthogroups_2024-Update
HORVU6Hr1G016880.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.05 Orthogroups_2024-Update
HORVU6Hr1G016890.6 No alias component *(LHCb1/2/3) of LHC-II complex 0.05 Orthogroups_2024-Update
HORVU6Hr1G016940.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
HORVU6Hr1G091660.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.06 Orthogroups_2024-Update
HORVU7Hr1G040370.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.06 Orthogroups_2024-Update
HORVU7Hr1G040380.5 No alias component *(LHCb1/2/3) of LHC-II complex 0.07 Orthogroups_2024-Update
HORVU7Hr1G046320.1 No alias component *(LHCa1) of LHC-I complex 0.06 Orthogroups_2024-Update
Kfl00009_0500 kfl00009_0500_v1.... (p13869|cb12_pethy : 139.0) Chlorophyll a-b binding... 0.02 Orthogroups_2024-Update
Kfl00009_0510 kfl00009_0510_v1.1 (at3g54890 : 130.0) Encodes a component of the light... 0.02 Orthogroups_2024-Update
LOC_Os01g41710 No alias chlorophyll A-B binding protein, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os01g52240 No alias chlorophyll A-B binding protein, putative, expressed 0.05 Orthogroups_2024-Update
LOC_Os07g37550 No alias chlorophyll A-B binding protein, putative, expressed 0.06 Orthogroups_2024-Update
LOC_Os08g33820 No alias chlorophyll A-B binding protein, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os09g12540 No alias chlorophyll A-B binding protein, putative, expressed 0.05 Orthogroups_2024-Update
LOC_Os11g13890 No alias chlorophyll A-B binding protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_10431493g0010 No alias (at3g54890 : 355.0) Encodes a component of the light... 0.03 Orthogroups_2024-Update
Mp1g29620.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp2g15420.1 No alias component LHCa1 of LHC-I complex 0.02 Orthogroups_2024-Update
Mp3g07840.1 No alias component LHCa4 of LHC-I complex 0.02 Orthogroups_2024-Update
Mp4g10900.1 No alias component LHCb5 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp7g06720.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp7g06730.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Orthogroups_2024-Update
Mp7g06750.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp7g06770.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp8g13180.1 No alias component LHCa2 of LHC-I complex 0.02 Orthogroups_2024-Update
PSME_00054494-RA No alias (p10049|cb21_pinth : 389.0) Chlorophyll a-b binding... 0.02 Orthogroups_2024-Update
PSME_00056454-RA No alias (p15194|cb2b_pinsy : 543.0) Chlorophyll a-b binding... 0.03 Orthogroups_2024-Update
Potri.003G020400 No alias light harvesting complex photosystem II subunit 6 0.02 Orthogroups_2024-Update
Potri.003G171500 No alias photosystem I light harvesting complex gene 2 0.02 Orthogroups_2024-Update
Potri.005G239200 No alias light-harvesting chlorophyll-protein complex II subunit B1 0.03 Orthogroups_2024-Update
Potri.011G079500 No alias light-harvesting chlorophyll-protein complex II subunit B1 0.03 Orthogroups_2024-Update
Potri.014G029700 No alias photosystem I light harvesting complex gene 5 0.02 Orthogroups_2024-Update
Pp1s13_200V6 No alias chlorophyll a b binding 0.04 Orthogroups_2024-Update
Pp1s158_109V6 No alias chlorophyll a-b binding protein 6a 0.02 Orthogroups_2024-Update
Pp1s161_32V6 No alias lhca1.2 gene for putative chlorophyll a-b binding protein Lhca1.2 0.02 Orthogroups_2024-Update
Pp1s182_81V6 No alias chlorophyll a b binding 0.06 Orthogroups_2024-Update
Pp1s19_13V6 No alias light-harvesting complex ii protein lhcb2 0.05 Orthogroups_2024-Update
Pp1s1_625V6 No alias chlorophyll a b binding 0.04 Orthogroups_2024-Update
Pp1s252_28V6 No alias chlorophyll a-b binding protein of lhcii 0.03 Orthogroups_2024-Update
Pp1s27_97V6 No alias light-harvesting complex ii protein lhcb2 0.04 Orthogroups_2024-Update
Pp1s628_7V6 No alias light-harvesting complex ii protein lhcb5 0.02 Orthogroups_2024-Update
Pp1s651_2V6 No alias chlorophyll a-b binding protein 0.02 Orthogroups_2024-Update
Pp1s76_196V6 No alias chlorophyll a b binding 0.05 Orthogroups_2024-Update
Seita.2G299200.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.04 Orthogroups_2024-Update
Seita.2G352900.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Seita.2G366600.1 No alias component *(LHCa2) of LHC-I complex 0.04 Orthogroups_2024-Update
Seita.4G139900.1 No alias component *(LHCa1) of LHC-I complex 0.04 Orthogroups_2024-Update
Seita.8G080900.1 No alias component *(LHCb5) of LHC-II complex 0.04 Orthogroups_2024-Update
Seita.9G177100.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.04 Orthogroups_2024-Update
Sobic.001G177000.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.08 Orthogroups_2024-Update
Sobic.002G159100.1 No alias component *(LHCq) of LHC-II complex 0.04 Orthogroups_2024-Update
Sobic.002G288300.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.05 Orthogroups_2024-Update
Sobic.002G289100.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Sobic.002G339200.2 No alias component *(LHCb1/2/3) of LHC-II complex 0.07 Orthogroups_2024-Update
Sobic.002G352100.1 No alias component *(LHCa2) of LHC-I complex 0.04 Orthogroups_2024-Update
Sobic.003G209800.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.04 Orthogroups_2024-Update
Sobic.003G209900.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.04 Orthogroups_2024-Update
Sobic.004G056900.1 No alias component *(LHCa1) of LHC-I complex 0.08 Orthogroups_2024-Update
Sobic.005G087000.1 No alias component *(LHCb5) of LHC-II complex 0.07 Orthogroups_2024-Update
Sobic.007G136900.1 No alias component *(LHCa4) of LHC-I complex 0.05 Orthogroups_2024-Update
Sobic.009G234600.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.04 Orthogroups_2024-Update
Solyc02g070970 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.04 Orthogroups_2024-Update
Solyc02g070980 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.03 Orthogroups_2024-Update
Solyc02g070990 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.04 Orthogroups_2024-Update
Solyc02g071000 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.04 Orthogroups_2024-Update
Solyc02g071010 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.03 Orthogroups_2024-Update
Solyc03g005790 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.03 Orthogroups_2024-Update
Solyc06g063370 No alias Type I (26 kD) CP29 polypeptide 0.03 Orthogroups_2024-Update
Solyc06g069730 No alias chlorophyll a-b binding protein Cab12 0.04 Orthogroups_2024-Update
Solyc07g047850 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.04 Orthogroups_2024-Update
Solyc10g006230 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.04 Orthogroups_2024-Update
Solyc12g006140 No alias Cab-5 gene encoding chlorophyll a/b-binding protein 0.06 Orthogroups_2024-Update
Solyc12g011450 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.04 Orthogroups_2024-Update
Sopen02g019860 No alias Chlorophyll A-B binding protein 0.04 Orthogroups_2024-Update
Sopen02g020010 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen02g020020 No alias Chlorophyll A-B binding protein 0.05 Orthogroups_2024-Update
Sopen02g020030 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen02g020040 No alias Chlorophyll A-B binding protein 0.04 Orthogroups_2024-Update
Sopen02g020050 No alias Chlorophyll A-B binding protein 0.04 Orthogroups_2024-Update
Sopen02g020060 No alias Chlorophyll A-B binding protein 0.04 Orthogroups_2024-Update
Sopen02g020070 No alias Chlorophyll A-B binding protein 0.04 Orthogroups_2024-Update
Sopen02g020080 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen02g020090 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen03g001780 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen05g034460 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen06g027030 No alias Chlorophyll A-B binding protein 0.04 Orthogroups_2024-Update
Sopen07g031780 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen08g021280 No alias Chlorophyll A-B binding protein 0.04 Orthogroups_2024-Update
Sopen10g002190 No alias Chlorophyll A-B binding protein 0.04 Orthogroups_2024-Update
Sopen12g002100 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen12g006800 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0004096 catalase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016851 magnesium chelatase activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
BP GO:0042126 nitrate metabolic process IEP Predicted GO
BP GO:0042128 nitrate assimilation IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Predicted GO
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0071941 nitrogen cycle metabolic process IEP Predicted GO
BP GO:2001057 reactive nitrogen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 88 249
No external refs found!