Sopen07g011690

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0001022 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001022_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen07g011690
Cluster	HCCA clusters: Cluster_47

Target	Alias	Description	ECC score	Gene Family Method
Sopen03g025060	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
Sopen05g008880	No alias	gag-polypeptide of LTR copia-type	0.03	Orthogroups_2024-Update
Sopen06g017140	No alias	GAG-pre-integrase domain	0.04	Orthogroups_2024-Update
Sopen07g012190	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
Sopen07g017790	No alias	gag-polypeptide of LTR copia-type	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR025724	GAG-pre-integrase_dom	438	483
IPR001878	Znf_CCHC	255	269
IPR013103	RVT_2	486	715

External Links

No external refs found!