Sopen07g011690


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0001022 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001022_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g011690
Cluster HCCA clusters: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Sopen03g025060 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen05g008880 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen06g017140 No alias GAG-pre-integrase domain 0.04 Orthogroups_2024-Update
Sopen07g012190 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen07g017790 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 438 483
IPR001878 Znf_CCHC 255 269
IPR013103 RVT_2 486 715
No external refs found!