Description : SEUSS transcriptional co-regulator
Gene families : OG_42_0001027 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001027_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brachypodium release: Bradi4g22770 | |
Cluster | HCCA clusters: Cluster_212 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
437711 | No alias | SEUSS transcriptional co-regulator | 0.02 | Orthogroups_2024-Update | |
A4A49_10884 | No alias | transcriptional corepressor seuss | 0.02 | Orthogroups_2024-Update | |
At1g43850 | No alias | Transcriptional corepressor SEUSS... | 0.03 | Orthogroups_2024-Update | |
GRMZM2G048680 | No alias | SEUSS transcriptional co-regulator | 0.03 | Orthogroups_2024-Update | |
Glyma.04G241900 | No alias | SEUSS transcriptional co-regulator | 0.06 | Orthogroups_2024-Update | |
Glyma.06G121500 | No alias | SEUSS transcriptional co-regulator | 0.03 | Orthogroups_2024-Update | |
Glyma.09G146200 | No alias | SEUSS-like 2 | 0.04 | Orthogroups_2024-Update | |
Glyma.13G037600 | No alias | SEUSS transcriptional co-regulator | 0.03 | Orthogroups_2024-Update | |
Glyma.14G119800 | No alias | SEUSS transcriptional co-regulator | 0.07 | Orthogroups_2024-Update | |
Glyma.16G198200 | No alias | SEUSS-like 2 | 0.04 | Orthogroups_2024-Update | |
Glyma.16G198300 | No alias | SEUSS-like 2 | 0.07 | Orthogroups_2024-Update | |
MA_12796g0010 | No alias | (at1g43850 : 444.0) Encodes a transcriptional... | 0.03 | Orthogroups_2024-Update | |
MA_33392g0010 | No alias | (at5g62090 : 131.0) SEUSS-like 2 (SLK2); BEST... | 0.04 | Orthogroups_2024-Update | |
MA_9051g0020 | No alias | no hits & (original description: no original description) | 0.03 | Orthogroups_2024-Update | |
Mp1g03270.1 | No alias | Transcriptional corepressor SEUSS OS=Arabidopsis... | 0.02 | Orthogroups_2024-Update | |
PSME_00036824-RA | No alias | (at5g62090 : 384.0) SEUSS-like 2 (SLK2); BEST... | 0.04 | Orthogroups_2024-Update | |
PSME_00037034-RA | No alias | (at1g43850 : 471.0) Encodes a transcriptional... | 0.04 | Orthogroups_2024-Update | |
Potri.002G072900 | No alias | SEUSS transcriptional co-regulator | 0.06 | Orthogroups_2024-Update | |
Seita.2G044700.1 | No alias | adapter component *(SEU/SLK) of transcriptional... | 0.03 | Orthogroups_2024-Update | |
Sobic.005G079800.1 | No alias | adapter component *(SEU/SLK) of transcriptional... | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | Predicted GO |
BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003678 | DNA helicase activity | IEP | Predicted GO |
MF | GO:0004003 | ATP-dependent DNA helicase activity | IEP | Predicted GO |
MF | GO:0005096 | GTPase activator activity | IEP | Predicted GO |
MF | GO:0005488 | binding | IEP | Predicted GO |
MF | GO:0005515 | protein binding | IEP | Predicted GO |
MF | GO:0005524 | ATP binding | IEP | Predicted GO |
CC | GO:0005634 | nucleus | IEP | Predicted GO |
BP | GO:0006401 | RNA catabolic process | IEP | Predicted GO |
BP | GO:0006402 | mRNA catabolic process | IEP | Predicted GO |
MF | GO:0008026 | ATP-dependent helicase activity | IEP | Predicted GO |
MF | GO:0008047 | enzyme activator activity | IEP | Predicted GO |
MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Predicted GO |
MF | GO:0008144 | drug binding | IEP | Predicted GO |
BP | GO:0016071 | mRNA metabolic process | IEP | Predicted GO |
CC | GO:0016459 | myosin complex | IEP | Predicted GO |
MF | GO:0030695 | GTPase regulator activity | IEP | Predicted GO |
CC | GO:0031011 | Ino80 complex | IEP | Predicted GO |
CC | GO:0033202 | DNA helicase complex | IEP | Predicted GO |
MF | GO:0043138 | 3'-5' DNA helicase activity | IEP | Predicted GO |
MF | GO:0043140 | ATP-dependent 3'-5' DNA helicase activity | IEP | Predicted GO |
CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0044424 | intracellular part | IEP | Predicted GO |
CC | GO:0044454 | nuclear chromosome part | IEP | Predicted GO |
CC | GO:0044464 | cell part | IEP | Predicted GO |
MF | GO:0060589 | nucleoside-triphosphatase regulator activity | IEP | Predicted GO |
MF | GO:0070035 | purine NTP-dependent helicase activity | IEP | Predicted GO |
CC | GO:0070603 | SWI/SNF superfamily-type complex | IEP | Predicted GO |
CC | GO:0097346 | INO80-type complex | IEP | Predicted GO |
CC | GO:1904949 | ATPase complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR029005 | LIM-bd/SEUSS | 363 | 616 |
No external refs found! |