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  5. Sopen07g012430

Sopen07g012430


Description : Apocytochrome F, C-terminal


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g012430
Cluster HCCA clusters: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
Cre16.g660470 No alias Function unknown 0.01 Orthogroups_2024-Update
LOC_Os10g17470 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g21350 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Solyc04g040100 No alias No description available 0.02 Orthogroups_2024-Update
Solyc10g012010 No alias No description available 0.02 Orthogroups_2024-Update
Solyc10g054430 No alias No description available 0.04 Orthogroups_2024-Update
Sopen00g001810 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen00g009040 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen01g025150 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen04g010490 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g009630 No alias Integrase core domain 0.04 Orthogroups_2024-Update
Sopen12g019980 No alias Integrase core domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEA InterProScan predictions
MF GO:0009055 electron transfer activity IEA InterProScan predictions
CC GO:0009522 photosystem I IEA InterProScan predictions
CC GO:0009579 thylakoid IEA InterProScan predictions
BP GO:0015979 photosynthesis IEA InterProScan predictions
CC GO:0016021 integral component of membrane IEA InterProScan predictions
MF GO:0020037 heme binding IEA InterProScan predictions
CC GO:0031361 integral component of thylakoid membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 209 305
IPR003359 PSI_Ycf4_assembly 1305 1399
IPR024094 Cyt_f_lg_dom 1398 1546
IPR002325 Cyt_f 1558 1676
IPR000477 RT_dom 636 792
No external refs found!