1. Home
  2. Species
  3. Brachypodium distachyon
  4. Sequence
  5. Bradi4g36740

Bradi4g36740


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_42_0008180 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008180_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi4g36740
Cluster HCCA clusters: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
MA_108808g0010 No alias (at5g46680 : 339.0) Pentatricopeptide repeat (PPR-like)... 0.03 Orthogroups_2024-Update
PSME_00024262-RA No alias (at5g46680 : 331.0) Pentatricopeptide repeat (PPR-like)... 0.04 Orthogroups_2024-Update
Seita.8G053900.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 14 34
IPR002885 Pentatricopeptide_repeat 258 285
IPR002885 Pentatricopeptide_repeat 185 230
IPR002885 Pentatricopeptide_repeat 359 403
IPR002885 Pentatricopeptide_repeat 289 337
IPR033443 PPR_long 57 177
No external refs found!